Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PrpR - Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Methylcitrate utilization
Effector: 2-methylcitrate
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 29 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudoalteromonas atlantica T6c 5 1
Alteromonas macleodii 'Deep ecotype' 2 1
Glaciecola sp. HTCC2999 5 1
Colwellia psychrerythraea 34H 6 4
Alteromonadales bacterium TW-7 5 1
Pseudoalteromonas haloplanktis TAC125 5 1
Pseudoalteromonas tunicata D2 5 1
Idiomarina baltica OS145 5 1
Idiomarina loihiensis L2TR 5 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
MADE_03684
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_03684: putative membrane protein
 
Glaciecola sp. HTCC2999
*
Colwellia psychrerythraea 34H

Site:
position = -162
score = 4.21138
sequence = CTTGTTAACAAT

Site:
position = -93
score = 5.82454
sequence = ATTGTCGACAAT

Site:
position = -31
score = 5.82454
sequence = ATTGTCGACAAT

Gene: CPS_2159: putative membrane protein
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
putative membrane protein
 
CRON 2.
prpR
*
Pseudoalteromonas atlantica T6c

Site:
position = -116
score = 5.43002
sequence = ATTGTCGACAAC

Site:
position = -168
score = 5.82454
sequence = ATTGTCGACAAT

Gene: Patl_1418: Propionate catabolism transcriptional regulator, GntR family
*
Alteromonas macleodii 'Deep ecotype'

Site:
position = -87
score = 5.36427
sequence = GTTGTCGACAAT

Site:
position = -34
score = 5.29278
sequence = ATTGTCGACATT

Gene: MADE_03369: Propionate catabolism transcriptional regulator, GntR family
*
Glaciecola sp. HTCC2999

Site:
position = -91
score = 5.36427
sequence = GTTGTCGACAAT

Site:
position = -39
score = 5.82454
sequence = ATTGTCGACAAT

Gene: GHTCC_010100001200: Propionate catabolism transcriptional regulator, GntR family
*
Colwellia psychrerythraea 34H

Site:
position = -69
score = 5.12525
sequence = TTTGTCGACAAT

Site:
position = -141
score = 5.82454
sequence = ATTGTCGACAAT

Gene: CPS_2823: Propionate catabolism transcriptional regulator, GntR family
*
Alteromonadales bacterium TW-7

Site:
position = -26
score = 5.82454
sequence = ATTGTCGACAAT

Site:
position = -113
score = 5.27921
sequence = AGTGTCGACAAT

Site:
position = -175
score = 4.21828
sequence = GCTGTCGACACT

Gene: ATW7_14131: Propionate catabolism transcriptional regulator, GntR family
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -25
score = 5.82454
sequence = ATTGTCGACAAT

Site:
position = -112
score = 4.81894
sequence = GATGTCGACAAT

Site:
position = -175
score = 4.37224
sequence = GGTGTCGACACT

Gene: PSHAa1776: Propionate catabolism transcriptional regulator, GntR family
*
Pseudoalteromonas tunicata D2

Site:
position = -88
score = 5.82454
sequence = ATTGTCGACAAT

Site:
position = -21
score = 5.13192
sequence = ATTGTCGACAAA

Site:
position = -150
score = 4.14655
sequence = ATTGTCAACATA

Gene: PTD2_20517: Propionate catabolism transcriptional regulator, GntR family
*
Idiomarina baltica OS145

Site:
position = -17
score = 4.57992
sequence = TATGTCGACAAT

Site:
position = -90
score = 5.82454
sequence = ATTGTCGACAAT

Gene: OS145_00715: Propionate catabolism transcriptional regulator, GntR family
*
Idiomarina loihiensis L2TR

Site:
position = -86
score = 5.82454
sequence = ATTGTCGACAAT

Site:
position = -14
score = 5.12525
sequence = ACTGTCGACAAT

Gene: IL1428: Propionate catabolism transcriptional regulator, GntR family
Propionate catabolism transcriptional regulator, GntR family
prpB
 
Pseudoalteromonas atlantica T6c

Gene: Patl_1419: Methylisocitrate lyase (EC 4.1.3.30)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_03370: Methylisocitrate lyase (EC 4.1.3.30)
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100001195: Methylisocitrate lyase (EC 4.1.3.30)
 
Colwellia psychrerythraea 34H

Gene: CPS_2822: Methylisocitrate lyase (EC 4.1.3.30)
 
Alteromonadales bacterium TW-7

Gene: ATW7_14126: Methylisocitrate lyase (EC 4.1.3.30)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa1775: Methylisocitrate lyase (EC 4.1.3.30)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_20512: Methylisocitrate lyase (EC 4.1.3.30)
 
Idiomarina baltica OS145

Gene: OS145_00710: Methylisocitrate lyase (EC 4.1.3.30)
 
Idiomarina loihiensis L2TR

Gene: IL1427: Methylisocitrate lyase (EC 4.1.3.30)
Methylisocitrate lyase (EC 4.1.3.30)
prpC
 
Pseudoalteromonas atlantica T6c

Gene: Patl_1420: 2-methylcitrate synthase (EC 2.3.3.5)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_03371: 2-methylcitrate synthase (EC 2.3.3.5)
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100001190: 2-methylcitrate synthase (EC 2.3.3.5)
 
Colwellia psychrerythraea 34H

Gene: CPS_2821: 2-methylcitrate synthase (EC 2.3.3.5)
 
Alteromonadales bacterium TW-7

Gene: ATW7_14121: 2-methylcitrate synthase (EC 2.3.3.5)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa1774: 2-methylcitrate synthase (EC 2.3.3.5)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_20507: 2-methylcitrate synthase (EC 2.3.3.5)
 
Idiomarina baltica OS145

Gene: OS145_00705: 2-methylcitrate synthase (EC 2.3.3.5)
 
Idiomarina loihiensis L2TR

Gene: IL1426: 2-methylcitrate synthase (EC 2.3.3.5)
2-methylcitrate synthase (EC 2.3.3.5)
acnD
 
Pseudoalteromonas atlantica T6c

Gene: Patl_1421: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_03372: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100001185: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Colwellia psychrerythraea 34H

Gene: CPS_2820: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Alteromonadales bacterium TW-7

Gene: ATW7_14116: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa1773: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_20502: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Idiomarina baltica OS145

Gene: OS145_00700: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Idiomarina loihiensis L2TR

Gene: IL1425: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
prpF
 
Pseudoalteromonas atlantica T6c

Gene: Patl_1422: Aconitase accessory protein PrpF
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_03373: Aconitase accessory protein PrpF
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100001180: Aconitase accessory protein PrpF
 
Colwellia psychrerythraea 34H

Gene: CPS_2819: Aconitase accessory protein PrpF
 
Alteromonadales bacterium TW-7

Gene: ATW7_14111: Aconitase accessory protein PrpF
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa1772: Aconitase accessory protein PrpF
 
Pseudoalteromonas tunicata D2

Gene: PTD2_20497: Aconitase accessory protein PrpF
 
Idiomarina baltica OS145

Gene: OS145_00695: Aconitase accessory protein PrpF
 
Idiomarina loihiensis L2TR

Gene: IL1424: Aconitase accessory protein PrpF
Aconitase accessory protein PrpF
 
CRON 3.
acnB
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
*
Colwellia psychrerythraea 34H

Site:
position = -142
score = 5.27921
sequence = AGTGTCGACAAT

Site:
position = -292
score = 4.40059
sequence = ATTTCCGACAAT

Site:
position = -27
score = 4.02857
sequence = AGTGTCTCCAAT

Gene: CPS_4800: Aconitate hydratase 2 (EC 4.2.1.3)
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Aconitate hydratase 2 (EC 4.2.1.3)
 
CRON 4.
prpE
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_02248: Propionyl CoA synthase
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100005487: Propionyl CoA synthase
*
Colwellia psychrerythraea 34H

Site:
position = -53
score = 4.59349
sequence = TTTGTCGACAGT

Site:
position = -265
score = 4.60016
sequence = ATTGTCGACATA

Gene: CPS_0917: Propionyl CoA synthase
 
Alteromonadales bacterium TW-7

Gene: ATW7_03767: Propionyl CoA synthase
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa2444: Propionyl CoA synthase
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145

Gene: OS145_11861: Propionyl CoA synthase
 
Idiomarina loihiensis L2TR

Gene: IL1063: Propionyl CoA synthase
Propionyl CoA synthase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
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