Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NorR - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrosative stress response
Effector: Nitric oxide
Phylum: Proteobacteria/beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 25 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42 4 3
Comamonas testosteroni KF-1 2 2
Delftia acidovorans SPH-1 2 2
Polaromonas naphthalenivorans CJ2 2 2
Polaromonas sp. JS666 2 2
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110 2 2
Verminephrobacter eiseniae EF01-2
Methylibium petroleiphilum PM1
Leptothrix cholodnii SP-6
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
norR
 
Acidovorax avenae subsp. citrulli AAC00-1
*2
Acidovorax sp. JS42

Site:
position = -21
score = 4.88091
sequence = TAAGGTAAAAATTACCTTT

Site:
position = -1
score = 5.16977
sequence = AATGGTAGTTATGACCATA

Gene: Ajs_0093: anaerobic nitric oxide reductase transcription regulator, Fis family

Gene: Ajs_1896: anaerobic nitric oxide reductase transcription regulator, Fis family
*
Comamonas testosteroni KF-1

Site:
position = -56
score = 4.09079
sequence = ATGCGTCAATATGACATTG

Site:
position = -31
score = 3.89666
sequence = TGCTGTCTTTTTGACACCT

Site:
position = -10
score = 4.05082
sequence = CGCTGTCGTTATGACAACT

Gene: CtesDRAFT_3303: anaerobic nitric oxide reductase transcription regulator, Fis family
*
Delftia acidovorans SPH-1

Site:
position = -56
score = 4.30526
sequence = ATGCGTCAATATGACCTTC

Site:
position = -10
score = 4.28963
sequence = CGCAGTCTTTATGACCACA

Gene: Daci_1078: anaerobic nitric oxide reductase transcription regulator, Fis family
*
Polaromonas naphthalenivorans CJ2

Site:
position = -232
score = 4.39042
sequence = GACGGTGGATTTGACGATG

Gene: Pnap_1305: anaerobic nitric oxide reductase transcription regulator, Fis family
*
Polaromonas sp. JS666

Site:
position = -226
score = 4.64851
sequence = TACGGTGGATTTGACGATG

Gene: Bpro_3407: anaerobic nitric oxide reductase transcription regulator, Fis family
 
Rhodoferax ferrireducens DSM 15236
*
Variovorax paradoxus S110

Site:
position = -10
score = 4.53063
sequence = TGTTGTATTTATGACCACA

Site:
position = 11
score = 4.28096
sequence = CAGTGTCAGTTCGACCACA

Gene: Vapar_6323: anaerobic nitric oxide reductase transcription regulator, Fis family
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
anaerobic nitric oxide reductase transcription regulator, Fis family
 
CRON 2.
norB
 
Acidovorax avenae subsp. citrulli AAC00-1
*
Acidovorax sp. JS42

Site:
position = -155
score = 5.16977
sequence = TATGGTCATAACTACCATT

Site:
position = -135
score = 4.88091
sequence = AAAGGTAATTTTTACCTTA

Site:
position = -110
score = 3.92905
sequence = TACGGTTCATTTTACCCAT

Gene: Ajs_0092: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent
Ajs_0091
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42

Gene: Ajs_0091: Conserved protein
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
Conserved protein
 
CRON 3.
hmp
 
Acidovorax avenae subsp. citrulli AAC00-1
*
Acidovorax sp. JS42

Site:
position = -114
score = 3.83272
sequence = AAGAGTCTTTTTGACTACT

Gene: Ajs_1895: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)
*
Comamonas testosteroni KF-1

Site:
position = -122
score = 4.09079
sequence = CAATGTCATATTGACGCAT

Site:
position = -147
score = 3.89666
sequence = AGGTGTCAAAAAGACAGCA

Site:
position = -168
score = 4.05082
sequence = AGTTGTCATAACGACAGCG

Gene: CtesDRAFT_3302: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)
*
Delftia acidovorans SPH-1

Site:
position = -129
score = 4.28963
sequence = TGTGGTCATAAAGACTGCG

Site:
position = -83
score = 4.30526
sequence = GAAGGTCATATTGACGCAT

Gene: Daci_1079: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)
*
Polaromonas naphthalenivorans CJ2

Site:
position = 23
score = 4.39042
sequence = CATCGTCAAATCCACCGTC

Gene: Pnap_1304: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)
*
Polaromonas sp. JS666

Site:
position = 23
score = 4.64851
sequence = CATCGTCAAATCCACCGTA

Gene: Bpro_3408: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)
 
Rhodoferax ferrireducens DSM 15236
*
Variovorax paradoxus S110

Site:
position = -121
score = 3.82418
sequence = TGTTGCGAATTTGACCACG

Site:
position = -147
score = 4.53063
sequence = TGTGGTCATAAATACAACA

Site:
position = -168
score = 4.28096
sequence = TGTGGTCGAACTGACACTG

Gene: Vapar_6324: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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