Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NnrR - Caulobacterales

Properties
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Denitrification
Effector: Nitric oxide
Phylum: Proteobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 11 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Caulobacter crescentus CB15
Caulobacter segnis ATCC 21756 4 4
Caulobacter sp. K31
Phenylobacterium zucineum HLK1 5 5
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nnrR
 
Caulobacter crescentus CB15
 
Caulobacter segnis ATCC 21756

Gene: Cseg_3034: Nitric oxide responding transcriptional regulator NnrR, Crp family
 
Caulobacter sp. K31
*
Phenylobacterium zucineum HLK1

Site:
position = -198
score = 4.45939
sequence = CGTTGATCTTGCGCAACC

Gene: PHZ_c0618: Nitric oxide responding transcriptional regulator NnrR, Crp family
Nitric oxide responding transcriptional regulator NnrR, Crp family
 
CRON 2.
nirK
 
Caulobacter crescentus CB15
*
Caulobacter segnis ATCC 21756

Site:
position = -83
score = 4.93832
sequence = GTTTGTCCATGCACAAAG

Site:
position = -185
score = 3.94152
sequence = TTTTGCGCTGTCTCGAAC

Gene: Cseg_3038: nitrite reductase, copper-containing protein
 
Caulobacter sp. K31
*
Phenylobacterium zucineum HLK1

Site:
position = -85
score = 4.22236
sequence = GGTTGACCGTGCGCAATG

Gene: PHZ_c0614: nitrite reductase, copper-containing protein
nitrite reductase, copper-containing protein
 
CRON 3.
COG3794
 
Caulobacter crescentus CB15
*
Caulobacter segnis ATCC 21756

Site:
position = -92
score = 3.89981
sequence = GCTTGCTTTGGAGCAAGG

Site:
position = -146
score = 3.60496
sequence = GATTGTCGATCGACAAGG

Gene: Cseg_3035: Pseudoazurin precursor
 
Caulobacter sp. K31
*
Phenylobacterium zucineum HLK1

Site:
position = -99
score = 4.73797
sequence = GATTGTTCTGGCGCAAAG

Gene: PHZ_c0617: Pseudoazurin precursor
Pseudoazurin precursor
 
CRON 4.
norB
 
Caulobacter crescentus CB15
*
Caulobacter segnis ATCC 21756

Site:
position = -92
score = 4.36542
sequence = GGTTGCTCCCGAGCAACG

Gene: Cseg_3031: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent
 
Caulobacter sp. K31
*
Phenylobacterium zucineum HLK1

Site:
position = -96
score = 4.45939
sequence = GGTTGCGCAAGATCAACG

Gene: PHZ_c0619: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent
Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent
 
CRON 5.
dnrN
 
Caulobacter crescentus CB15
*
Caulobacter segnis ATCC 21756

Site:
position = -153
score = 3.94152
sequence = GTTCGAGACAGCGCAAAA

Gene: Cseg_3039: regulator of cell morphogenesis and NO signaling
 
Caulobacter sp. K31
*2
Phenylobacterium zucineum HLK1

Gene: PHZ_c0616: regulator of cell morphogenesis and NO signaling

Site:
position = -64
score = 5.1147
sequence = GTTTGTCCGGGCGCAAAG

Gene: PHZ_c1196: regulator of cell morphogenesis and NO signaling
regulator of cell morphogenesis and NO signaling
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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