Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NnrR - Sphingomonadales

Properties
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Denitrification
Effector: Nitric oxide
Phylum: Proteobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 2 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Erythrobacter litoralis HTCC2594
Erythrobacter sp. NAP1
Novosphingobium aromaticivorans DSM 12444
Sphingopyxis alaskensis RB2256
Sphingobium japonicum UT26S
Sphingomonas wittichii RW1 5 2
Zymomonas mobilis subsp. mobilis ZM4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nnrR
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444
 
Sphingopyxis alaskensis RB2256
 
Sphingobium japonicum UT26S
*
Sphingomonas wittichii RW1

Site:
position = 10
score = 5.40078
sequence = GTTTGCGCTGGCGCAAAC

Gene: Swit_5204: Nitric oxide responding transcriptional regulator NnrR (Crp/Fnr family)
 
Zymomonas mobilis subsp. mobilis ZM4
Nitric oxide responding transcriptional regulator NnrR (Crp/Fnr family)
 
CRON 2.
hmp1
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444
 
Sphingopyxis alaskensis RB2256
 
Sphingobium japonicum UT26S
*
Sphingomonas wittichii RW1

Site:
position = -71
score = 5.40078
sequence = GTTTGCGCCAGCGCAAAC

Gene: Swit_5203: Flavohemoprotein, nitric oxide dioxygenase
 
Zymomonas mobilis subsp. mobilis ZM4
Flavohemoprotein, nitric oxide dioxygenase
tehB
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444
 
Sphingopyxis alaskensis RB2256
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1

Gene: Swit_5202: possible tellurite resistance protein
 
Zymomonas mobilis subsp. mobilis ZM4
possible tellurite resistance protein
Swit_5201
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444
 
Sphingopyxis alaskensis RB2256
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1

Gene: Swit_5201: hypothetical protein
 
Zymomonas mobilis subsp. mobilis ZM4
hypothetical protein
norB
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444
 
Sphingopyxis alaskensis RB2256
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1

Gene: Swit_5200: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent
 
Zymomonas mobilis subsp. mobilis ZM4
Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD