Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NnrR - Rhodobacterales

Properties
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Denitrification
Effector: Nitric oxide
Phylum: Proteobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 14 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Rhodobacter sphaeroides 2.4.1 10 4
Paracoccus denitrificans PD1222
Jannaschia sp. CCS1
Rhodobacterales bacterium HTCC2654 18 6
Oceanicola granulosus HTCC2516
Loktanella vestfoldensis SKA53
Oceanicola batsensis HTCC2597
Roseovarius nubinhibens ISM
Roseovarius sp. 217 12 4
Sulfitobacter sp. EE-36
Silicibacter TM1040
Silicibacter pomeroyi DSS-3
Roseobacter sp. MED193
Hyphomonas neptunium ATCC 15444
Oceanicaulis alexandrii HTCC2633
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
norC
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -78
score = 4.32818
sequence = CGTTGCGATCCCGCAACT

Gene: RSP_0324: Nitric-oxide reductase subunit C (EC 1.7.99.7)
 
Paracoccus denitrificans PD1222

Gene: Pden_2484: Nitric-oxide reductase subunit C (EC 1.7.99.7)
 
Jannaschia sp. CCS1
*
Rhodobacterales bacterium HTCC2654

Site:
position = -146
score = 4.31714
sequence = CTTTGCGTTTCCACAACA

Gene: RB2654_12779: Nitric-oxide reductase subunit C (EC 1.7.99.7)
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
*
Roseovarius sp. 217

Site:
position = -74
score = 4.58687
sequence = CATTGCGCTGCAACAAAC

Gene: ROS217_10037: Nitric-oxide reductase subunit C (EC 1.7.99.7)
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3

Gene: SPOA0217: Nitric-oxide reductase subunit C (EC 1.7.99.7)
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Nitric-oxide reductase subunit C (EC 1.7.99.7)
norB
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0323: Nitric-oxide reductase subunit B (EC 1.7.99.7)
 
Paracoccus denitrificans PD1222

Gene: Pden_2483: Nitric-oxide reductase subunit B (EC 1.7.99.7)
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_12784: Nitric-oxide reductase subunit B (EC 1.7.99.7)
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_10042: Nitric-oxide reductase subunit B (EC 1.7.99.7)
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3

Gene: SPOA0216: Nitric-oxide reductase subunit B (EC 1.7.99.7)
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Nitric-oxide reductase subunit B (EC 1.7.99.7)
norQ
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0322: Nitric oxide reductase activation protein NorQ
 
Paracoccus denitrificans PD1222

Gene: Pden_2482: Nitric oxide reductase activation protein NorQ
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_12789: Nitric oxide reductase activation protein NorQ
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_10047: Nitric oxide reductase activation protein NorQ
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3

Gene: SPOA0215: Nitric oxide reductase activation protein NorQ
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Nitric oxide reductase activation protein NorQ
norD
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0321: Nitric oxide reductase activation protein NorD
 
Paracoccus denitrificans PD1222

Gene: Pden_2481: Nitric oxide reductase activation protein NorD
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_12794: Nitric oxide reductase activation protein NorD
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_10052: Nitric oxide reductase activation protein NorD
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3

Gene: SPOA0214: Nitric oxide reductase activation protein NorD
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Nitric oxide reductase activation protein NorD
nnrT
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0320: hypothetical protein
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_12799: hypothetical protein
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_10057: hypothetical protein
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
hypothetical protein
nnrT1
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0319: NnrT family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor)
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_10062: NnrU
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
NnrT family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor)
nnrU
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0318: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor)
 
Paracoccus denitrificans PD1222

Gene: Pden_2334: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor)
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_12804: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor)
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_14306: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor)
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3

Gene: SPO1134: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor)
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_1547: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor)
 
Oceanicaulis alexandrii HTCC2633
NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor)
Pden_4223
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_10067: hypothetical protein
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
hypothetical protein
 
CRON 2.
nosR
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_4220: Nitrous oxide reductase maturation protein NosR
 
Jannaschia sp. CCS1
*
Rhodobacterales bacterium HTCC2654

Site:
position = -73
score = 4.84895
sequence = GTTTGCGAAATCACAAAC

Gene: RB2654_12849: Nitrous oxide reductase maturation protein NosR
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_15196: Nitrous oxide reductase maturation protein NosR
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3

Gene: SPOA0049: Nitrous oxide reductase maturation protein NosR
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Nitrous oxide reductase maturation protein NosR
nosZ
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_4219: Nitrous-oxide reductase (EC 1.7.99.6)
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_12844: Nitrous-oxide reductase (EC 1.7.99.6)
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_15191: Nitrous-oxide reductase (EC 1.7.99.6)
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3

Gene: SPOA0050: Nitrous-oxide reductase (EC 1.7.99.6)
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Nitrous-oxide reductase (EC 1.7.99.6)
nosD
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_4218: Nitrous oxide reductase maturation protein NosD
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_12839: Nitrous oxide reductase maturation protein NosD
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_15186: Nitrous oxide reductase maturation protein NosD
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3

Gene: SPOA0051: Nitrous oxide reductase maturation protein NosD
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Nitrous oxide reductase maturation protein NosD
nosF
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_4217: Nitrous oxide reductase maturation protein NosF (ATPase)
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_12834: Nitrous oxide reductase maturation protein NosF (ATPase)
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_15181: Nitrous oxide reductase maturation protein NosF (ATPase)
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3

Gene: SPOA0052: Nitrous oxide reductase maturation protein NosF (ATPase)
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Nitrous oxide reductase maturation protein NosF (ATPase)
nosY
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_4216: Nitrous oxide reductase maturation transmembrane protein NosY
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_12829: Nitrous oxide reductase maturation transmembrane protein NosY
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_15176: Nitrous oxide reductase maturation transmembrane protein NosY
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3

Gene: SPOA0053: Nitrous oxide reductase maturation transmembrane protein NosY
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Nitrous oxide reductase maturation transmembrane protein NosY
nosL
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_4215: Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_12824: Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_15171: Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3

Gene: SPOA0054: Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL
nosX
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_4214: Nitrous oxide reductase maturation periplasmic protein NosX
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_12819: Nitrous oxide reductase maturation periplasmic protein NosX
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_15166: Nitrous oxide reductase maturation periplasmic protein NosX
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Nitrous oxide reductase maturation periplasmic protein NosX
 
CRON 3.
nnrR
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -32
score = 4.62004
sequence = CATTGTGCTGCCGCAAAT

Gene: RSP_0327: Nitric oxide responding transcriptional regulator NnrR, Crp family
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
*
Rhodobacterales bacterium HTCC2654

Site:
position = -31
score = 4.02173
sequence = CATTGCACTTCGACAAAC

Gene: RB2654_12769: Nitric oxide responding transcriptional regulator NnrR, Crp family
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
*
Roseovarius sp. 217

Site:
position = -46
score = 4.87794
sequence = TTTTGCTCTGGCGCAAAC

Gene: ROS217_10027: Nitric oxide responding transcriptional regulator NnrR, Crp family
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Nitric oxide responding transcriptional regulator NnrR, Crp family
 
CRON 4.
DUF1858
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -89
score = 4.32818
sequence = AGTTGCGGGATCGCAACG

Gene: RSP_0325: hypothetical protein
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
*
Rhodobacterales bacterium HTCC2654

Site:
position = -63
score = 4.31714
sequence = TGTTGTGGAAACGCAAAG

Gene: RB2654_12774: hypothetical protein
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
*
Roseovarius sp. 217

Site:
position = -64
score = 4.58687
sequence = GTTTGTTGCAGCGCAATG

Gene: ROS217_10032: hypothetical protein
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
hypothetical protein
 
CRON 5.
COG3794
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
*
Rhodobacterales bacterium HTCC2654

Site:
position = -84
score = 4.02173
sequence = GTTTGTCGAAGTGCAATG

Gene: RB2654_12764: Pseudoazurin precursor
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
*
Roseovarius sp. 217

Site:
position = -81
score = 4.87794
sequence = GTTTGCGCCAGAGCAAAA

Gene: ROS217_10022: Pseudoazurin precursor
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Pseudoazurin precursor
nirK
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
*
Rhodobacterales bacterium HTCC2654

Site:
position = -168
score = 4.25858
sequence = CTTTGCGCTTGATCAATA

Gene: RB2654_12814: Copper-containing nitrite reductase (EC 1.7.2.1)
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM

Gene: ISM_17635: Copper-containing nitrite reductase (EC 1.7.2.1)
 
Roseovarius sp. 217

Gene: ROS217_10017: Copper-containing nitrite reductase (EC 1.7.2.1)
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Copper-containing nitrite reductase (EC 1.7.2.1)
nirV
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_12809: Nitrite reductase accessory protein NirV
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_10012: Nitrite reductase accessory protein NirV
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Nitrite reductase accessory protein NirV
nnrS
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -197
score = 4.62004
sequence = ATTTGCGGCAGCACAATG

Gene: RSP_0328: NnrS protein involved in response to NO
 
Paracoccus denitrificans PD1222

Gene: Pden_4230: NnrS protein involved in response to NO
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_12759: NnrS protein involved in response to NO
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_14301: NnrS protein involved in response to NO
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_1556: NnrS protein involved in response to NO
 
Oceanicaulis alexandrii HTCC2633
NnrS protein involved in response to NO
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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