Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog LldR - Oceanospirillales/Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Lactate utilization
Effector: L-lactate
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 18 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Hahella chejuensis KCTC 2396
Marinobacter aqueolei 5 2
Marinobacter sp. ELB17 3 2
Oceanobacter sp. RED65
Oceanospirillum sp. MED92
Marinomonas sp. MWYL1 2 2
Saccharophagus degradans 2-40
Teredinibacter turnerae T7901
Cellvibrio japonicus Ueda107
Chromohalobacter salexigens DSM 3043 8 4
Reinekea sp. MED297
Alcanivorax borkumensis SK2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
lldR
 
Hahella chejuensis KCTC 2396
*
Marinobacter aqueolei

Site:
position = -41
score = 5.68468
sequence = TATTGGTAAGACCAATT

Site:
position = -180
score = 6.37314
sequence = AATTGGTATTACCAATT

Gene: Maqu_0362: Lactate-responsive regulator LldR, GntR family
*
Marinobacter sp. ELB17

Site:
position = -26
score = 5.32005
sequence = AATTGGTCTTACCAAAG

Site:
position = -167
score = 6.26356
sequence = AATTGGTAATACCAATT

Gene: MELB17_00875: Lactate-responsive regulator LldR, GntR family
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
*
Marinomonas sp. MWYL1

Site:
position = -78
score = 5.33503
sequence = AATTGGTTTTACCACTT

Site:
position = -186
score = 6.09612
sequence = AATTGGTAAGACCAATT

Gene: Mmwyl1_0071: Lactate-responsive regulator LldR, GntR family
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
*
Chromohalobacter salexigens DSM 3043

Site:
position = -69
score = 5.65565
sequence = AATTGGTAATACCATTT

Site:
position = -270
score = 5.9617
sequence = TATTGGTATTACCAATT

Gene: Csal_0403: Lactate-responsive regulator LldR, GntR family
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Lactate-responsive regulator LldR, GntR family
 
CRON 2.
lldP
 
Hahella chejuensis KCTC 2396
*
Marinobacter aqueolei

Site:
position = -58
score = 6.26356
sequence = AATTGGTAATACCAATT

Site:
position = -197
score = 6.29286
sequence = AATTGGTCTTACCAATA

Gene: Maqu_0363: L-lactate permease
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901

Gene: TERTU_3159: L-lactate permease
 
Cellvibrio japonicus Ueda107
*
Chromohalobacter salexigens DSM 3043

Site:
position = -127
score = 5.9617
sequence = TATTGGTATTACCAATT

Gene: Csal_2686: L-lactate permease
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
L-lactate permease
lldE
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei

Gene: Maqu_0364: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE
lldF
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei

Gene: Maqu_0365: L-lactate dehydrogenase, iron-sulfur cluster-binding subunit LldF
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
L-lactate dehydrogenase, iron-sulfur cluster-binding subunit LldF
lldG
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei

Gene: Maqu_0366: L-lactate dehydrogenase, subunit LldG
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
L-lactate dehydrogenase, subunit LldG
lldD
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
*
Marinobacter sp. ELB17

Site:
position = -375
score = 6.37314
sequence = AATTGGTATTACCAATT

Site:
position = -516
score = 4.90218
sequence = CTTTGGTAAGACCAATT

Gene: MELB17_00880: L-lactate dehydrogenase (EC 1.1.2.3)
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
*
Chromohalobacter salexigens DSM 3043

Site:
position = -85
score = 6.08114
sequence = AATTGGTAATACCAATA

Site:
position = -286
score = 6.04902
sequence = AAATGGTATTACCAATT

Gene: Csal_0404: L-lactate dehydrogenase (EC 1.1.2.3)
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
L-lactate dehydrogenase (EC 1.1.2.3)
dld
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17

Gene: MELB17_00885: D-lactate dehydrogenase
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
*
Marinomonas sp. MWYL1

Site:
position = -84
score = 6.47528
sequence = AATTGGTCTTACCAATT

Site:
position = -192
score = 5.40709
sequence = AAGTGGTAAAACCAATT

Gene: Mmwyl1_0072: D-lactate dehydrogenase
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_0405: D-lactate dehydrogenase
 
Reinekea sp. MED297

Gene: MED297_12967: D-lactate dehydrogenase
 
Alcanivorax borkumensis SK2
D-lactate dehydrogenase
 
CRON 3.
glcD
 
Hahella chejuensis KCTC 2396

Gene: HCH_05806: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
 
Marinobacter aqueolei

Gene: Maqu_3304: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
 
Marinobacter sp. ELB17

Gene: MELB17_21760: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
*
Chromohalobacter salexigens DSM 3043

Site:
position = -157
score = 5.68468
sequence = TATTGGTAAGACCAATT

Gene: Csal_2687: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
glcE
 
Hahella chejuensis KCTC 2396

Gene: HCH_05805: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
 
Marinobacter aqueolei

Gene: Maqu_3303: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
 
Marinobacter sp. ELB17

Gene: MELB17_21765: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_2688: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
glcF
 
Hahella chejuensis KCTC 2396

Gene: HCH_05804: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
 
Marinobacter aqueolei

Gene: Maqu_3302: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
 
Marinobacter sp. ELB17

Gene: MELB17_21770: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_2689: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
glcG
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei

Gene: Maqu_3305: Hypothetical protein GlcG in glycolate utilization operon
 
Marinobacter sp. ELB17

Gene: MELB17_21755: Hypothetical protein GlcG in glycolate utilization operon
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_2690: Hypothetical protein GlcG in glycolate utilization operon
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Hypothetical protein GlcG in glycolate utilization operon
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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