Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog FadR - Psychromonadaceae/Aeromonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor (activator)
Biological process: Fatty acid degradation
Effector: Palmitoyl-CoA; Oleoyl-CoA
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 10 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Psychromonas ingrahamii 37 1 1
Psychromonas sp. CNPT3 1 1
Moritella sp. PE36 3 2
Aeromonas hydrophila subsp. hydrophila ATCC 7966 4 3
Aeromonas salmonicida subsp. salmonicida A449 4 3
Tolumonas auensis DSM 9187
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
fadI
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
*2
Moritella sp. PE36

Gene: PE36_12372: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)

Site:
position = -42
score = 5.21185
sequence = ATGAGGTCTGACCTCTT

Gene: PE36_17987: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Site:
position = -50
score = 5.3124
sequence = ATGAGGTCAGACCTCTC

Gene: AHA_2153: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
*
Aeromonas salmonicida subsp. salmonicida A449

Site:
position = -39
score = 5.37738
sequence = ATGAGGTCAGACCTCTG

Gene: ASA_2146: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Tolumonas auensis DSM 9187
FadI component of anaerobic fatty acid oxidation complex
fadJ
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36

Gene: PE36_17982: FadJ component of anaerobic fatty acid oxidation complex
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Gene: AHA_2154: FadJ component of anaerobic fatty acid oxidation complex
 
Aeromonas salmonicida subsp. salmonicida A449

Gene: ASA_2145: FadJ component of anaerobic fatty acid oxidation complex
 
Tolumonas auensis DSM 9187
FadJ component of anaerobic fatty acid oxidation complex
 
CRON 2.
fadL
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Site:
position = -148
score = 4.84434
sequence = CACTGGTCTGATTTCTT

Gene: AHA_2145: Long-chain fatty acid transport protein precursor
*
Aeromonas salmonicida subsp. salmonicida A449

Site:
position = -148
score = 4.84434
sequence = CACTGGTCTGATTTCTT

Gene: ASA_2156: Long-chain fatty acid transport protein precursor
 
Tolumonas auensis DSM 9187
Long-chain fatty acid transport protein precursor
 
CRON 3.
fadE
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
*
Moritella sp. PE36

Site:
position = -54
score = 5.20811
sequence = TTCTGGTCTGACCTCTG

Gene: PE36_21579: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Site:
position = -70
score = 5.75723
sequence = AACAGGTCAGACCTCTG

Gene: AHA_1573: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Aeromonas salmonicida subsp. salmonicida A449

Site:
position = -71
score = 5.75723
sequence = AACAGGTCAGACCTCTG

Gene: ASA_2784: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Tolumonas auensis DSM 9187
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
CRON 4.
fabB
*
Psychromonas ingrahamii 37

Site:
position = -173
score = 4.96939
sequence = AACTGATCAGACCAGTG

Gene: Ping_1995: fatty oxidation complex, alpha subunit FadB
*
Psychromonas sp. CNPT3

Site:
position = -170
score = 4.41957
sequence = TGCTGATCAGACCAGTG

Gene: PCNPT3_07205: fatty oxidation complex, alpha subunit FadB
 
Moritella sp. PE36

Gene: PE36_02414: fatty oxidation complex, alpha subunit FadB
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Gene: AHA_1920: fatty oxidation complex, alpha subunit FadB
 
Aeromonas salmonicida subsp. salmonicida A449

Gene: ASA_2365: fatty oxidation complex, alpha subunit FadB
 
Tolumonas auensis DSM 9187

Gene: Tola_1573: fatty oxidation complex, alpha subunit FadB
fatty oxidation complex, alpha subunit FadB
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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