Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog FadR - Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor (activator)
Biological process: Fatty acid degradation
Effector: Palmitoyl-CoA; Oleoyl-CoA
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 39 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudoalteromonas atlantica T6c 7 5
Alteromonas macleodii 'Deep ecotype' 8 6
Glaciecola sp. HTCC2999 6 4
Colwellia psychrerythraea 34H 4 3
Alteromonadales bacterium TW-7 8 6
Pseudoalteromonas haloplanktis TAC125 6 5
Pseudoalteromonas tunicata D2 6 5
Idiomarina baltica OS145 3 2
Idiomarina loihiensis L2TR 4 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG0596
 
Pseudoalteromonas atlantica T6c

Gene: Patl_2805: Predicted hydrolase/acyltransferase
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_01136: Predicted hydrolase/acyltransferase
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100007547: Predicted hydrolase/acyltransferase
 
Colwellia psychrerythraea 34H

Gene: CPS_1187: Predicted hydrolase/acyltransferase
*
Alteromonadales bacterium TW-7

Site:
position = -54
score = 4.65681
sequence = TAGTGGTCTGACAACTT

Gene: ATW7_00335: Predicted hydrolase/acyltransferase
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAb0501: Predicted hydrolase/acyltransferase
 
Pseudoalteromonas tunicata D2

Gene: PTD2_02226: Predicted hydrolase/acyltransferase
 
Idiomarina baltica OS145

Gene: OS145_10280: Predicted hydrolase/acyltransferase
 
Idiomarina loihiensis L2TR

Gene: IL1828: Predicted hydrolase/acyltransferase
Predicted hydrolase/acyltransferase
fadD
 
Pseudoalteromonas atlantica T6c

Gene: Patl_2804: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Alteromonas macleodii 'Deep ecotype'

Site:
position = -79
score = 4.21074
sequence = AAGTTATCAGACCAGTT

Gene: MADE_01137: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_1189: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
 
Alteromonadales bacterium TW-7

Gene: ATW7_00340: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAb0502: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_02221: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
 
Idiomarina baltica OS145

Gene: OS145_10285: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Idiomarina loihiensis L2TR

Site:
position = -67
score = 4.02442
sequence = AACTGGTCGGATATGCG

Gene: IL1827: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
 
CRON 2.
fadH
 
Pseudoalteromonas atlantica T6c

Gene: Patl_2400: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_03303: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100003019: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
*
Colwellia psychrerythraea 34H

Site:
position = -30
score = 4.68473
sequence = AACTGGTACGACCAATA

Gene: CPS_0925: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
*
Alteromonadales bacterium TW-7

Site:
position = -30
score = 4.80683
sequence = CACAGGTTAGACCAGTT

Gene: ATW7_07132: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -18
score = 4.80683
sequence = CACAGGTTAGACCAGTT

Gene: PSHAa1410: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
*
Pseudoalteromonas tunicata D2

Site:
position = -33
score = 4.66776
sequence = CAGAGGTATGACCAGTA

Gene: PTD2_19952: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
 
Idiomarina baltica OS145

Gene: OS145_10515: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
 
Idiomarina loihiensis L2TR

Gene: IL1748: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
 
CRON 3.
acdB
*
Pseudoalteromonas atlantica T6c

Site:
position = -75
score = 4.86669
sequence = AAGTGGTTAGACCAGTT

Gene: Patl_1408: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
*
Colwellia psychrerythraea 34H

Site:
position = -70
score = 4.63235
sequence = TAGTGGTATGACCAGTG

Gene: CPS_2263: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
CRON 4.
fadI
*
Pseudoalteromonas atlantica T6c

Site:
position = -46
score = 5.58064
sequence = TACAGGTCAGACCACTT

Gene: Patl_1663: FadI component of anaerobic fatty acid oxidation complex
*
Alteromonas macleodii 'Deep ecotype'

Site:
position = -65
score = 5.58064
sequence = TACAGGTCAGACCACTT

Gene: MADE_02701: FadI component of anaerobic fatty acid oxidation complex
*
Glaciecola sp. HTCC2999

Site:
position = -100
score = 4.78772
sequence = TAGAGGTCGGACCACTG

Gene: GHTCC_010100010338: FadI component of anaerobic fatty acid oxidation complex
*
Colwellia psychrerythraea 34H

Site:
position = -55
score = 5.64049
sequence = AAGAGGTCAGACCTCTT

Gene: CPS_3157: FadI component of anaerobic fatty acid oxidation complex
*
Alteromonadales bacterium TW-7

Site:
position = -32
score = 5.54633
sequence = AACAGGTCAGACCTGTC

Gene: ATW7_05611: FadI component of anaerobic fatty acid oxidation complex
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -33
score = 5.54633
sequence = AACAGGTCAGACCTGTC

Gene: PSHAa0966: FadI component of anaerobic fatty acid oxidation complex
*
Pseudoalteromonas tunicata D2

Site:
position = -32
score = 5.69918
sequence = AACAGGTCAGACCTGTA

Gene: PTD2_11739: FadI component of anaerobic fatty acid oxidation complex
*
Idiomarina baltica OS145

Site:
position = -48
score = 4.78213
sequence = GTGTGGTCAGACCAGTA

Gene: OS145_12280: FadI component of anaerobic fatty acid oxidation complex
*
Idiomarina loihiensis L2TR

Site:
position = -42
score = 5.14641
sequence = TTGTGGTCAGACCAGTA

Gene: IL0994: FadI component of anaerobic fatty acid oxidation complex
FadI component of anaerobic fatty acid oxidation complex
fadJ
 
Pseudoalteromonas atlantica T6c

Gene: Patl_1664: FadJ component of anaerobic fatty acid oxidation complex
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_02700: FadJ component of anaerobic fatty acid oxidation complex
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100010333: FadJ component of anaerobic fatty acid oxidation complex
 
Colwellia psychrerythraea 34H

Gene: CPS_3156: FadJ component of anaerobic fatty acid oxidation complex
 
Alteromonadales bacterium TW-7

Gene: ATW7_05616: FadJ component of anaerobic fatty acid oxidation complex
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa0967: FadJ component of anaerobic fatty acid oxidation complex
 
Pseudoalteromonas tunicata D2

Gene: PTD2_11734: FadJ component of anaerobic fatty acid oxidation complex
 
Idiomarina baltica OS145

Gene: OS145_12285: FadJ component of anaerobic fatty acid oxidation complex
 
Idiomarina loihiensis L2TR

Gene: IL0993: FadJ component of anaerobic fatty acid oxidation complex
FadJ component of anaerobic fatty acid oxidation complex
 
CRON 5.
fadB
*
Pseudoalteromonas atlantica T6c

Site:
position = -199
score = 4.37768
sequence = AACTGGCATGACCAGTT

Gene: Patl_0201: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
*
Alteromonas macleodii 'Deep ecotype'

Site:
position = -174
score = 3.81714
sequence = AAGTCATCGGACCACTA

Gene: MADE_03736: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
*
Glaciecola sp. HTCC2999

Site:
position = -67
score = 4.41907
sequence = TACTTGTAAGACCAGTT

Gene: GHTCC_010100011184: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
 
Colwellia psychrerythraea 34H

Gene: CPS_0393: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
 
Alteromonadales bacterium TW-7

Gene: ATW7_16353: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa0011: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_05090: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
 
Idiomarina baltica OS145

Gene: OS145_03250: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
 
Idiomarina loihiensis L2TR

Gene: IL0011: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
fadA
 
Pseudoalteromonas atlantica T6c

Gene: Patl_0202: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_03737: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100011179: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Colwellia psychrerythraea 34H

Gene: CPS_0392: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 2
Alteromonadales bacterium TW-7

Gene: ATW7_16348: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)

Gene: ATW7_16343: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa0010: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_05095: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Idiomarina baltica OS145

Gene: OS145_03255: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Idiomarina loihiensis L2TR

Gene: IL0010: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
CRON 6.
fadE
*
Pseudoalteromonas atlantica T6c

Site:
position = -31
score = 5.29599
sequence = CTCTGGTCTGACCTCTA

Gene: Patl_2492: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Alteromonas macleodii 'Deep ecotype'

Site:
position = -97
score = 4.53698
sequence = TGCTGGTCTGACCTCGA

Gene: MADE_02152: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Glaciecola sp. HTCC2999

Site:
position = -27
score = 4.62532
sequence = ATCTGGTCTGACCATCA

Gene: GHTCC_010100006812: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Colwellia psychrerythraea 34H

Gene: CPS_2265: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Alteromonadales bacterium TW-7

Site:
position = -30
score = 5.14081
sequence = AGGTGGTCTGACCTCTA

Gene: ATW7_08866: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -31
score = 5.14081
sequence = AGGTGGTCTGACCTCTA

Gene: PSHAa1952: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Pseudoalteromonas tunicata D2

Site:
position = -131
score = 5.5591
sequence = TAGTGGTCAGACCTCTA

Gene: PTD2_22672: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Idiomarina baltica OS145

Site:
position = -33
score = 5.72463
sequence = TACTGGTCAGACCTCTA

Gene: OS145_01812: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Idiomarina loihiensis L2TR

Site:
position = -34
score = 5.49247
sequence = CACTGGTCAGACCTCCA

Gene: IL1665: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
CRON 7.
fadE2
*
Pseudoalteromonas atlantica T6c

Site:
position = -31
score = 4.84986
sequence = AACTGGTCAGATGAGCG

Gene: Patl_1688: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Alteromonas macleodii 'Deep ecotype'

Site:
position = -28
score = 4.84986
sequence = AACTGGTCAGATGAGCG

Gene: MADE_02616: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Glaciecola sp. HTCC2999

Site:
position = -59
score = 4.89865
sequence = AACTGGTCAGATGAGCT

Gene: GHTCC_010100000785: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Colwellia psychrerythraea 34H
*
Alteromonadales bacterium TW-7

Site:
position = -22
score = 4.33789
sequence = ATCTGGTCGGATGAGTT

Gene: ATW7_02937: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -22
score = 4.33789
sequence = ATCTGGTCGGATGAGTT

Gene: PSHAb0374: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Pseudoalteromonas tunicata D2

Site:
position = -20
score = 4.33789
sequence = ATCTGGTCGGATGAGTT

Gene: PTD2_02811: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
CRON 8.
tesB
 
Pseudoalteromonas atlantica T6c

Gene: Patl_2935: Acyl-CoA thioesterase
*
Alteromonas macleodii 'Deep ecotype'

Site:
position = -24
score = 3.66606
sequence = AACTCATCAGACCAGAC

Gene: MADE_02424: Acyl-CoA thioesterase
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100006927: Acyl-CoA thioesterase
 
Colwellia psychrerythraea 34H
*
Alteromonadales bacterium TW-7

Site:
position = -65
score = 4.63094
sequence = TACTGGCCTGACCAGTT

Gene: ATW7_02822: Acyl-CoA thioesterase
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -67
score = 4.29953
sequence = TGCTGGTCTGACAAGTT

Gene: PSHAb0355: Acyl-CoA thioesterase
*
Pseudoalteromonas tunicata D2

Site:
position = -66
score = 5.08517
sequence = AACTGGTCTGACCTTTT

Gene: PTD2_02881: Acyl-CoA thioesterase
 
Idiomarina baltica OS145

Gene: OS145_06779: Acyl-CoA thioesterase
 
Idiomarina loihiensis L2TR

Gene: IL0656: Acyl-CoA thioesterase
Acyl-CoA thioesterase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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