Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog FadR - Vibrionales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor (activator)
Biological process: Fatty acid degradation
Effector: Palmitoyl-CoA; Oleoyl-CoA
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 77 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Vibrio cholerae O1 biovar eltor str. N16961 8 7
Vibrio vulnificus CMCP6 9 7
Vibrio harveyi ATCC BAA-1116 10 8
Vibrio parahaemolyticus RIMD 2210633 9 7
Vibrio shilonii AK1 9 7
Vibrio splendidus LGP32 9 7
Vibrio fischeri ES114 9 7
Vibrio salmonicida LFI1238 9 8
Vibrio angustum S14 8 6
Photobacterium profundum SS9 8 6
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
fadL
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -125
score = 3.4389
sequence = CAATGGTCGGATTTCTA

Gene: VC1043: Long-chain fatty acid transport protein
*
Vibrio vulnificus CMCP6

Site:
position = -108
score = 3.30655
sequence = CAATGGTCGGATTTGTA

Gene: VV1_1972: Long-chain fatty acid transport protein
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -103
score = 3.30655
sequence = CAATGGTCGGATTTGTA

Gene: VIBHAR_03124: Long-chain fatty acid transport protein
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP2212: Long-chain fatty acid transport protein
*
Vibrio shilonii AK1

Site:
position = -115
score = 4.76194
sequence = TACTGGTCAGATTTCTA

Gene: VSAK1_03229: Long-chain fatty acid transport protein
*
Vibrio splendidus LGP32

Site:
position = -107
score = 3.30655
sequence = CAATGGTCGGATTTGTA

Gene: VS_0861: Long-chain fatty acid transport protein
*
Vibrio fischeri ES114

Site:
position = -128
score = 3.16746
sequence = CAGTGGTCGGATTTGTC

Gene: VF_1812: Long-chain fatty acid transport protein
*
Vibrio salmonicida LFI1238

Site:
position = -128
score = 3.31403
sequence = TAGTGGTCGGATTTGTC

Gene: VSAL_I2269: Long-chain fatty acid transport protein
*2
Vibrio angustum S14

Gene: VAS14_05623: Long-chain fatty acid transport protein

Site:
position = -107
score = 4.56992
sequence = CACTGGTCAGATTTGAT

Gene: VAS14_17316: Long-chain fatty acid transport protein
*
Photobacterium profundum SS9

Site:
position = -101
score = 4.95795
sequence = AACTGGTCAGATTTGAT

Gene: PBPRA0958: Long-chain fatty acid transport protein
Long-chain fatty acid transport protein
 
CRON 2.
fabA
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -70
score = 3.25674
sequence = CACTGATCGGAGTTGTT

Gene: VC1483: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Vibrio vulnificus CMCP6

Site:
position = -86
score = 4.20745
sequence = AACTGGTTTGTCTAGTA

Site:
position = -71
score = 3.40332
sequence = TACTGATCGGAGTTGTT

Gene: VV1_2629: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -85
score = 4.20745
sequence = AACTGGTTTGTCTAGTA

Site:
position = -70
score = 3.40332
sequence = TACTGATCGGAGTTGTT

Gene: VIBHAR_02332: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -85
score = 4.20745
sequence = AACTGGTTTGTCTAGTA

Site:
position = -70
score = 3.40332
sequence = TACTGATCGGAGTTGTT

Gene: VP1591: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
 
Vibrio shilonii AK1

Gene: VSAK1_05230: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Vibrio splendidus LGP32

Site:
position = -79
score = 4.20745
sequence = AACTGGTTTGTCTAGTA

Site:
position = -64
score = 4.00285
sequence = TACTGATCGGACTTGTT

Gene: VS_1429: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
 
Vibrio fischeri ES114

Gene: VF_1292: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Vibrio salmonicida LFI1238

Site:
position = -71
score = 4.23772
sequence = AGCTGATCAGACTTGAT

Site:
position = -86
score = 4.58246
sequence = AACTGGTTTAACCAGAG

Gene: VSAL_I1556: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Vibrio angustum S14

Site:
position = -74
score = 3.64476
sequence = AACTGATCCGAGTTGTT

Site:
position = -89
score = 4.57125
sequence = AACTGGTTTGTCCAGAA

Gene: VAS14_02868: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Photobacterium profundum SS9

Site:
position = -74
score = 3.25674
sequence = CACTGATCCGAGTTGTT

Gene: PBPRA1773: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
 
CRON 3.
fadB
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -76
score = 5.44213
sequence = AACTGGTCAAACCAGAA

Gene: VC2758: Enoyl-CoA hydratase (EC 4.2.1.17)
*
Vibrio vulnificus CMCP6

Site:
position = -109
score = 5.11679
sequence = AACTGGTCTAACCAGAA

Gene: VV1_0981: Enoyl-CoA hydratase (EC 4.2.1.17)
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -126
score = 5.05411
sequence = CACTGGTCAAACCAGAA

Gene: VIBHAR_00460: Enoyl-CoA hydratase (EC 4.2.1.17)
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -115
score = 5.20068
sequence = TACTGGTCAAACCAGAA

Gene: VP0030: Enoyl-CoA hydratase (EC 4.2.1.17)
*
Vibrio shilonii AK1

Site:
position = -76
score = 5.11679
sequence = AACTGGTCTAACCAGAA

Gene: VSAK1_12702: Enoyl-CoA hydratase (EC 4.2.1.17)
*
Vibrio splendidus LGP32

Site:
position = -87
score = 4.44046
sequence = AACTGGTCTTACCAGGT

Gene: VS_0041: Enoyl-CoA hydratase (EC 4.2.1.17)
*
Vibrio fischeri ES114

Site:
position = -68
score = 5.58953
sequence = AACTGGTCAAACCAGAT

Gene: VF_0025: Enoyl-CoA hydratase (EC 4.2.1.17)
*
Vibrio salmonicida LFI1238

Site:
position = -68
score = 4.5827
sequence = AACTGGTCAAACCAGGC

Gene: VSAL_I2974: Enoyl-CoA hydratase (EC 4.2.1.17)
*
Vibrio angustum S14

Site:
position = -63
score = 5.45302
sequence = AACAGGTCAAACCAGTT

Gene: VAS14_22297: Enoyl-CoA hydratase (EC 4.2.1.17)
*
Photobacterium profundum SS9

Site:
position = -59
score = 5.45302
sequence = AACAGGTCAAACCAGTT

Gene: PBPRA0064: Enoyl-CoA hydratase (EC 4.2.1.17)
Enoyl-CoA hydratase (EC 4.2.1.17)
fadA
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VC2759: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
 
Vibrio vulnificus CMCP6

Gene: VV1_0982: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_00459: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP0029: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
 
Vibrio shilonii AK1

Gene: VSAK1_12697: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
 
Vibrio splendidus LGP32

Gene: VS_0040: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
 
Vibrio fischeri ES114

Gene: VF_0024: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
 
Vibrio salmonicida LFI1238

Gene: VSAL_I2973: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
 
Vibrio angustum S14

Gene: VAS14_22302: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
 
Photobacterium profundum SS9

Gene: PBPRA0063: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
3-ketoacyl-CoA thiolase (EC 2.3.1.16)
 
CRON 4.
plsB
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -131
score = 4.60409
sequence = AAAAGGTTTGACCAGTT

Gene: VC0093: Glycerol-3-phosphate acyltransferase (EC 2.3.1.15)
*
Vibrio vulnificus CMCP6

Site:
position = -131
score = 4.60409
sequence = AAAAGGTTTGACCAGTT

Gene: VV1_1165: Glycerol-3-phosphate acyltransferase (EC 2.3.1.15)
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -213
score = 4.60409
sequence = AAAAGGTTTGACCAGTT

Gene: VIBHAR_00269: Glycerol-3-phosphate acyltransferase (EC 2.3.1.15)
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -158
score = 4.60409
sequence = AAAAGGTTTGACCAGTT

Gene: VP2947: Glycerol-3-phosphate acyltransferase (EC 2.3.1.15)
*
Vibrio shilonii AK1

Site:
position = -132
score = 4.7027
sequence = AAAAGGTAAGACCAGTT

Gene: VSAK1_12467: Glycerol-3-phosphate acyltransferase (EC 2.3.1.15)
*
Vibrio splendidus LGP32

Site:
position = -148
score = 4.92943
sequence = AAAAGGTTAGACCAGTT

Gene: VS_3009: Glycerol-3-phosphate acyltransferase (EC 2.3.1.15)
*
Vibrio fischeri ES114

Site:
position = -95
score = 4.60409
sequence = AAAAGGTTTGACCAGTT

Gene: VF_2443: Glycerol-3-phosphate acyltransferase (EC 2.3.1.15)
*
Vibrio salmonicida LFI1238

Site:
position = -95
score = 4.60409
sequence = AAAAGGTTTGACCAGTT

Gene: VSAL_I2894: Glycerol-3-phosphate acyltransferase (EC 2.3.1.15)
 
Vibrio angustum S14

Gene: VAS14_21842: Glycerol-3-phosphate acyltransferase (EC 2.3.1.15)
 
Photobacterium profundum SS9

Gene: PBPRA0164: Glycerol-3-phosphate acyltransferase (EC 2.3.1.15)
Glycerol-3-phosphate acyltransferase (EC 2.3.1.15)
 
CRON 5.
fadE2
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -82
score = 5.69961
sequence = AACTGGTTAGACCACTA

Gene: VC2231: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Vibrio vulnificus CMCP6

Site:
position = -138
score = 3.84417
sequence = CTCTACTCAGATCACTT

Site:
position = -68
score = 5.54167
sequence = AACTGGTTTGACCTCTT

Gene: VV1_1896: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -67
score = 5.62556
sequence = TACTGGTTAGACCTCTT

Gene: VIBHAR_03204: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -67
score = 5.86701
sequence = AACTGGTTAGACCTCTT

Gene: VP2289: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Vibrio shilonii AK1

Site:
position = -83
score = 4.8106
sequence = TACTGGTACGACCTCTT

Gene: VSAK1_07334: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Vibrio splendidus LGP32

Site:
position = -63
score = 5.30374
sequence = GACTGGTTAGACCTCTT

Gene: VS_2322: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Vibrio fischeri ES114

Site:
position = -97
score = 5.86701
sequence = AACTGGTTAGACCTCTT

Gene: VF_1932: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Vibrio salmonicida LFI1238

Site:
position = -114
score = 5.25683
sequence = AACTAGTTAGACCTCTT

Gene: VSAL_I2395: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Vibrio angustum S14

Site:
position = -155
score = 5.31494
sequence = AAGTGGTAAGACCTCTT

Gene: VAS14_00423: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Photobacterium profundum SS9

Site:
position = -127
score = 5.31494
sequence = AAGTGGTAAGACCTCTT

Gene: PBPRA2915: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
CRON 6.
VC2105
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -109
score = 4.02288
sequence = AAGTGCTCTTACCAGTT

Gene: VC2105: Thioesterase/thiol ester dehydrase-isomerase
 
Vibrio vulnificus CMCP6

Gene: VV1_0174: Thioesterase/thiol ester dehydrase-isomerase
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -57
score = 4.79838
sequence = TACAGATCAGACCAGTT

Gene: VIBHAR_01340: Thioesterase/thiol ester dehydrase-isomerase
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -57
score = 4.47304
sequence = TACAGATCTGACCAGTT

Gene: VP0834: Thioesterase/thiol ester dehydrase-isomerase
*
Vibrio shilonii AK1

Site:
position = -52
score = 4.71449
sequence = AACACGTCTGACCAGTT

Gene: VSAK1_10623: Thioesterase/thiol ester dehydrase-isomerase
 
Vibrio splendidus LGP32

Gene: VS_2257: Thioesterase/thiol ester dehydrase-isomerase
*
Vibrio fischeri ES114

Site:
position = -32
score = 4.68894
sequence = ATGAGGTCTGACCAGAA

Gene: VF_0811: Thioesterase/thiol ester dehydrase-isomerase
*
Vibrio salmonicida LFI1238

Site:
position = -33
score = 4.68894
sequence = ATGAGGTCTGACCAGAA

Gene: VSAL_I0834: Thioesterase/thiol ester dehydrase-isomerase
 
Vibrio angustum S14

Gene: VAS14_17681: Thioesterase/thiol ester dehydrase-isomerase
 
Photobacterium profundum SS9
Thioesterase/thiol ester dehydrase-isomerase
 
CRON 7.
fadH
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -42
score = 5.21583
sequence = TTCTGGTCAGACCATAT

Gene: VC1993: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
*
Vibrio vulnificus CMCP6

Site:
position = -38
score = 4.49816
sequence = CTCTGGTCTGACCACGA

Gene: VV1_3132: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -39
score = 4.95561
sequence = CTGTGGTCAGACCACAA

Gene: VIBHAR_03043: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -48
score = 4.28916
sequence = GTCTGGTCAGACCATGA

Gene: VP2151: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
*
Vibrio shilonii AK1

Site:
position = -43
score = 5.42752
sequence = TTCTGGTCAGACCACAA

Gene: VSAK1_03494: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
*
Vibrio splendidus LGP32

Site:
position = -33
score = 4.77684
sequence = TTGTGGTCTGACCACAA

Gene: VS_0938: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
*
Vibrio fischeri ES114

Site:
position = -39
score = 5.42752
sequence = TTCTGGTCAGACCACAA

Gene: VF_1642: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
*
Vibrio salmonicida LFI1238

Site:
position = -39
score = 5.10218
sequence = TTCTGGTCTGACCACAA

Gene: VSAL_I2156: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
*
Vibrio angustum S14

Site:
position = -37
score = 5.17095
sequence = TACTGGTCAGACCATAA

Gene: VAS14_05978: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
*
Photobacterium profundum SS9

Site:
position = -36
score = 5.17095
sequence = TACTGGTCAGACCATAA

Gene: PBPRA2594: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
 
CRON 8.
fadI
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VC1046: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
*
Vibrio vulnificus CMCP6

Site:
position = -34
score = 5.69985
sequence = ATCAGGTCAGACCTCTT

Gene: VV1_1975: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -34
score = 5.69985
sequence = ATCAGGTCAGACCTCTT

Gene: VIBHAR_03121: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -34
score = 5.69985
sequence = ATCAGGTCAGACCTCTT

Gene: VP2209: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
*
Vibrio shilonii AK1

Site:
position = -31
score = 5.18349
sequence = CTGTGGTCAGACCTCTT

Gene: VSAK1_03244: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
*
Vibrio splendidus LGP32

Site:
position = -34
score = 5.45841
sequence = TTCAGGTCAGACCTCTT

Gene: VS_0864: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
*
Vibrio fischeri ES114

Site:
position = -39
score = 4.26979
sequence = TTGAGGTCTGACCACCT

Gene: VF_1811: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
*
Vibrio salmonicida LFI1238

Site:
position = -43
score = 4.64033
sequence = TTGAGGTCTGACCACTA

Gene: VSAL_I2268: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
*
Vibrio angustum S14

Site:
position = -71
score = 4.33851
sequence = GTGAGGTCTGACCTCTA

Gene: VAS14_17336: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
*
Photobacterium profundum SS9

Site:
position = -91
score = 4.85733
sequence = TTGTGGTCTGACCTCTA

Gene: PBPRA0961: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
3-ketoacyl-CoA thiolase (EC 2.3.1.16)
fadJ
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VC1047: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Vibrio vulnificus CMCP6

Gene: VV1_1976: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_03120: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP2208: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Vibrio shilonii AK1

Gene: VSAK1_03249: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Vibrio splendidus LGP32

Gene: VS_0865: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Vibrio fischeri ES114

Gene: VF_1810: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14

Gene: VAS14_17341: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Photobacterium profundum SS9

Gene: PBPRA0962: Enoyl-CoA hydratase (EC 4.2.1.17)
Enoyl-CoA hydratase (EC 4.2.1.17)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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