Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NikR - Desulfuromonadales

Properties
Regulator type: Transcription factor
Regulator family: NikR
Regulation mode: repressor
Biological process: Nickel homeostasis
Effector: Nickel ion, (Ni2+)
Phylum: Proteobacteria/delta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 7 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Geobacter metallireducens GS-15 3 1
Geobacter sulfurreducens PCA 3 1
Geobacter uraniumreducens Rf4 4 2
Geobacter sp. FRC-32
Geobacter sp. M21 3 1
Geobacter lovleyi SZ 3 1
Pelobacter propionicus DSM 2379 3 1
Pelobacter carbinolicus str. DSM 2380
Desulfuromonas acetoxidans DSM 684
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nikMN
*
Geobacter metallireducens GS-15

Site:
position = -62
score = 7.67061
sequence = GTGTTAC-(13)-GTAACAC

Gene: Gmet_2441: Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter
*
Geobacter sulfurreducens PCA

Site:
position = -56
score = 7.63177
sequence = GTGTTAC-(14)-GTGACAC

Gene: GSU1279: Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter
*2
Geobacter uraniumreducens Rf4

Site:
position = -48
score = 6.57491
sequence = GTGCTAC-(13)-GTGTTAC

Gene: Gura_0780: Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter

Site:
position = -67
score = 6.46722
sequence = GTGTTAC-(13)-GTGCTAC

Gene: Gura_2762: Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter
 2
Geobacter sp. FRC-32

Gene: Geob_0946: Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter

Gene: Geob_2474: Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter
*
Geobacter sp. M21

Site:
position = -66
score = 6.46722
sequence = GTGTTAC-(13)-GTGCTAC

Gene: GM21_2002: Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter
*
Geobacter lovleyi SZ

Site:
position = -38
score = 6.44359
sequence = GTGCTAC-(13)-GTGGCAC

Gene: Glov_2769: Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter
*
Pelobacter propionicus DSM 2379

Site:
position = -43
score = 5.99449
sequence = ATGCTAC-(13)-GTGACAC

Gene: Ppro_1805: Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter
 
Pelobacter carbinolicus str. DSM 2380
 
Desulfuromonas acetoxidans DSM 684
Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter
nikQ
 
Geobacter metallireducens GS-15

Gene: Gmet_2440: Transmembrane component NikQ of energizing module of nickel ECF transporter
 
Geobacter sulfurreducens PCA

Gene: GSU1280: Transmembrane component NikQ of energizing module of nickel ECF transporter
 
Geobacter uraniumreducens Rf4

Gene: Gura_2761: Transmembrane component NikQ of energizing module of nickel ECF transporter
 2
Geobacter sp. FRC-32

Gene: Geob_3338: Transmembrane component NikQ of energizing module of nickel ECF transporter

Gene: Geob_2475: Transmembrane component NikQ of energizing module of nickel ECF transporter
 
Geobacter sp. M21

Gene: GM21_2003: Transmembrane component NikQ of energizing module of nickel ECF transporter
 
Geobacter lovleyi SZ

Gene: Glov_2768: Transmembrane component NikQ of energizing module of nickel ECF transporter
 
Pelobacter propionicus DSM 2379

Gene: Ppro_1806: Transmembrane component NikQ of energizing module of nickel ECF transporter
 
Pelobacter carbinolicus str. DSM 2380
 
Desulfuromonas acetoxidans DSM 684
Transmembrane component NikQ of energizing module of nickel ECF transporter
nikO
 
Geobacter metallireducens GS-15

Gene: Gmet_2439: ATPase component NikO of energizing module of nickel ECF transporter
 
Geobacter sulfurreducens PCA

Gene: GSU1281: ATPase component NikO of energizing module of nickel ECF transporter
 
Geobacter uraniumreducens Rf4

Gene: Gura_2760: ATPase component NikO of energizing module of nickel ECF transporter
 2
Geobacter sp. FRC-32

Gene: Geob_3337: ATPase component NikO of energizing module of nickel ECF transporter

Gene: Geob_2476: ATPase component NikO of energizing module of nickel ECF transporter
 
Geobacter sp. M21

Gene: GM21_2004: ATPase component NikO of energizing module of nickel ECF transporter
 
Geobacter lovleyi SZ

Gene: Glov_2767: ATPase component NikO of energizing module of nickel ECF transporter
 
Pelobacter propionicus DSM 2379

Gene: Ppro_1807: ATPase component NikO of energizing module of nickel ECF transporter
 
Pelobacter carbinolicus str. DSM 2380
 
Desulfuromonas acetoxidans DSM 684
ATPase component NikO of energizing module of nickel ECF transporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD