Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NikR - Rhodospirillales

Properties
Regulator type: Transcription factor
Regulator family: NikR
Regulation mode: repressor
Biological process: Nickel homeostasis
Effector: Nickel ion, (Ni2+)
Phylum: Proteobacteria/alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 2 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Rhodospirillum rubrum ATCC 11170
Magnetospirillum magnetotacticum MS-1
Magnetospirillum magneticum AMB-1
Azospirillum sp. B510 6 2
Rhodospirillum centenum SW
Gluconacetobacter diazotrophicus PAl 5
Acetobacter pasteurianus IFO 3283-01
Gluconobacter oxydans 621H
Granulibacter bethesdensis CGDNIH1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nikR
 
Rhodospirillum rubrum ATCC 11170
 
Magnetospirillum magnetotacticum MS-1
 
Magnetospirillum magneticum AMB-1
*
Azospirillum sp. B510

Site:
position = -73
score = 7.74979
sequence = GTATGAT-(14)-ATCATAC

Gene: AZL_008760: Nickel-responsive repressor NikR, CopG family
 
Rhodospirillum centenum SW
 
Gluconacetobacter diazotrophicus PAl 5
 
Acetobacter pasteurianus IFO 3283-01
 
Gluconobacter oxydans 621H
 
Granulibacter bethesdensis CGDNIH1
Nickel-responsive repressor NikR, CopG family
 
CRON 2.
nikA
 
Rhodospirillum rubrum ATCC 11170

Gene: Rru_A2277: Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3)
 
Magnetospirillum magnetotacticum MS-1
 
Magnetospirillum magneticum AMB-1
*
Azospirillum sp. B510

Site:
position = -126
score = 7.74979
sequence = GTATGAT-(14)-ATCATAC

Gene: AZL_008770: Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3)
 
Rhodospirillum centenum SW
 
Gluconacetobacter diazotrophicus PAl 5
 
Acetobacter pasteurianus IFO 3283-01
 
Gluconobacter oxydans 621H
 
Granulibacter bethesdensis CGDNIH1
Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3)
nikB
 
Rhodospirillum rubrum ATCC 11170

Gene: Rru_A2276: Nickel transport system permease protein NikB (TC 3.A.1.5.3)
 
Magnetospirillum magnetotacticum MS-1
 
Magnetospirillum magneticum AMB-1
 
Azospirillum sp. B510

Gene: AZL_008780: Nickel transport system permease protein NikB (TC 3.A.1.5.3)
 
Rhodospirillum centenum SW
 
Gluconacetobacter diazotrophicus PAl 5
 
Acetobacter pasteurianus IFO 3283-01
 
Gluconobacter oxydans 621H
 
Granulibacter bethesdensis CGDNIH1
Nickel transport system permease protein NikB (TC 3.A.1.5.3)
nikC
 
Rhodospirillum rubrum ATCC 11170

Gene: Rru_A2275: Nickel transport system permease protein NikC (TC 3.A.1.5.3)
 
Magnetospirillum magnetotacticum MS-1
 
Magnetospirillum magneticum AMB-1
 
Azospirillum sp. B510

Gene: AZL_008790: Nickel transport system permease protein NikC (TC 3.A.1.5.3)
 
Rhodospirillum centenum SW
 
Gluconacetobacter diazotrophicus PAl 5
 
Acetobacter pasteurianus IFO 3283-01
 
Gluconobacter oxydans 621H
 
Granulibacter bethesdensis CGDNIH1
Nickel transport system permease protein NikC (TC 3.A.1.5.3)
nikD
 
Rhodospirillum rubrum ATCC 11170

Gene: Rru_A2274: Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3)
 
Magnetospirillum magnetotacticum MS-1
 
Magnetospirillum magneticum AMB-1
 
Azospirillum sp. B510

Gene: AZL_008800: Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3)
 
Rhodospirillum centenum SW
 
Gluconacetobacter diazotrophicus PAl 5
 
Acetobacter pasteurianus IFO 3283-01
 
Gluconobacter oxydans 621H
 
Granulibacter bethesdensis CGDNIH1
Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3)
nikE
 
Rhodospirillum rubrum ATCC 11170

Gene: Rru_A2273: Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3)
 
Magnetospirillum magnetotacticum MS-1
 
Magnetospirillum magneticum AMB-1
 
Azospirillum sp. B510

Gene: AZL_008810: Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3)
 
Rhodospirillum centenum SW
 
Gluconacetobacter diazotrophicus PAl 5
 
Acetobacter pasteurianus IFO 3283-01
 
Gluconobacter oxydans 621H
 
Granulibacter bethesdensis CGDNIH1
Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD