Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NikR - Rhizobiales

Properties
Regulator type: Transcription factor
Regulator family: NikR
Regulation mode: repressor
Biological process: Nickel homeostasis
Effector: Nickel ion, (Ni2+)
Phylum: Proteobacteria/alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 11 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Sinorhizobium meliloti 1021
Rhizobium sp. NGR234
Rhizobium leguminosarum bv. viciae 3841
Rhizobium etli CFN 42
Agrobacterium tumefaciens str. C58 (Cereon)
Mesorhizobium sp. BNC1
Mesorhizobium loti MAFF303099
Brucella melitensis 16M 6 2
Bartonella quintana str. Toulouse
Rhodopseudomonas palustris CGA009 2 2
Bradyrhizobium japonicum USDA 110 3 2
Bradyrhizobium sp. BTAi1 5 5
Nitrobacter winogradskyi Nb-255
Azorhizobium caulinodans ORS 571
Xanthobacter autotrophicus Py2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nikR
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
*
Brucella melitensis 16M

Site:
position = -180
score = 7.10095
sequence = GTATGAT-(14)-ATCATAT

Gene: BMEII0486: Nickel responsive regulator NikR, CopG family
 
Bartonella quintana str. Toulouse
*
Rhodopseudomonas palustris CGA009

Site:
position = -59
score = 7.66225
sequence = GTATGAC-(14)-TTCATAC

Gene: RPA4756: Nickel responsive regulator NikR, CopG family
 
Bradyrhizobium japonicum USDA 110

Gene: bll0699: Nickel responsive regulator NikR, CopG family
*
Bradyrhizobium sp. BTAi1

Site:
position = -62
score = 7.74979
sequence = GTATGAT-(14)-ATCATAC

Gene: BBta_6191: Nickel responsive regulator NikR, CopG family
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
Nickel responsive regulator NikR, CopG family
 
CRON 2.
omp_Ni-2
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110
*
Bradyrhizobium sp. BTAi1

Site:
position = -80
score = 7.74979
sequence = GTATGAT-(14)-ATCATAC

Gene: BBta_3362: Nickel-regulated outer membrane transporter, TonB-dependent family
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
Nickel-regulated outer membrane transporter, TonB-dependent family
 
CRON 3.
hoxN2
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110
*
Bradyrhizobium sp. BTAi1

Site:
position = -85
score = 7.66225
sequence = GTATGAC-(14)-TTCATAC

Gene: BBta_3358: high-affinity nickel-transporter, NiCoT family
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
high-affinity nickel-transporter, NiCoT family
 
CRON 4.
nikA
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
*
Brucella melitensis 16M

Site:
position = -57
score = 7.10095
sequence = ATATGAT-(14)-ATCATAC

Gene: BMEII0487: Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3)
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3)
nikB
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M

Gene: BMEII0488: Nickel transport system permease protein NikB (TC 3.A.1.5.3)
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
Nickel transport system permease protein NikB (TC 3.A.1.5.3)
nikC
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M

Gene: BMEII0489: Nickel transport system permease protein NikC (TC 3.A.1.5.3)
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
Nickel transport system permease protein NikC (TC 3.A.1.5.3)
nikD
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M

Gene: BMEII0490: Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3)
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3)
nikE
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M

Gene: BMEII0491: Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3)
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3)
 
CRON 5.
hoxN
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009
*2
Bradyrhizobium japonicum USDA 110

Site:
position = 22
score = 7.74979
sequence = GTATGAT-(14)-ATCATAC

Gene: bll6910: high-affinity nickel-transporter, NiCoT family

Site:
position = 13
score = 7.83304
sequence = GTATGAC-(14)-ATCATAC

Gene: bll6949: high-affinity nickel-transporter, NiCoT family
*
Bradyrhizobium sp. BTAi1

Site:
position = -2
score = 6.85059
sequence = GTATGAC-(14)-ATCATCC

Gene: BBta_1993: high-affinity nickel-transporter, NiCoT family
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
high-affinity nickel-transporter, NiCoT family
omp_Ni
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
*
Rhodopseudomonas palustris CGA009

Site:
position = -89
score = 7.66225
sequence = GTATGAA-(14)-GTCATAC

Gene: RPA4757: Predicted outer membrane nickel transporter, TonB-dependent family
 
Bradyrhizobium japonicum USDA 110

Gene: bll6948: Predicted outer membrane nickel transporter, TonB-dependent family
*
Bradyrhizobium sp. BTAi1

Site:
position = -179
score = 7.74979
sequence = GTATGAT-(14)-ATCATAC

Gene: BBta_6192: Predicted outer membrane nickel transporter, TonB-dependent family
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
Predicted outer membrane nickel transporter, TonB-dependent family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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