Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NikR - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: NikR
Regulation mode: repressor
Biological process: Nickel homeostasis
Effector: Nickel ion, (Ni2+)
Phylum: Proteobacteria/beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 3 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1 2 1
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110
Verminephrobacter eiseniae EF01-2
Methylibium petroleiphilum PM1 7 2
Leptothrix cholodnii SP-6
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
omp_Ni-2
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
*
Methylibium petroleiphilum PM1

Site:
position = -108
score = 6.98672
sequence = GTATGAG-(13)-ATCTTAC

Gene: Mpe_A2798: Predicted outer membrane nickel transporter, TonB-dependent family
 
Leptothrix cholodnii SP-6
Predicted outer membrane nickel transporter, TonB-dependent family
 
CRON 2.
omp_Ni
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_3624: Predicted outer membrane nickel transporter, TonB-dependent family
*
Delftia acidovorans SPH-1

Site:
position = -42
score = 7.40822
sequence = GTATGAA-(13)-TTCATAC

Gene: Daci_3112: Predicted outer membrane nickel transporter, TonB-dependent family
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
*
Methylibium petroleiphilum PM1

Site:
position = -76
score = 7.579
sequence = GTATGAA-(13)-ATCATAC

Gene: Mpe_A2804: Predicted outer membrane nickel transporter, TonB-dependent family
 
Leptothrix cholodnii SP-6
Predicted outer membrane nickel transporter, TonB-dependent family
nikK
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_3623: Additional periplasmic component NikK of nickel ECF transporter
 
Delftia acidovorans SPH-1

Gene: Daci_3113: Additional periplasmic component NikK of nickel ECF transporter
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1

Gene: Mpe_A2803: Additional periplasmic component NikK of nickel ECF transporter
 
Leptothrix cholodnii SP-6
Additional periplasmic component NikK of nickel ECF transporter
nikN
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1

Gene: Mpe_A2802: Additional substrate-specific component NikN of nickel ECF transporter
 
Leptothrix cholodnii SP-6
Additional substrate-specific component NikN of nickel ECF transporter
nikM
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1

Gene: Mpe_A2801: Substrate-specific component NikM of nickel ECF transporter
 
Leptothrix cholodnii SP-6
Substrate-specific component NikM of nickel ECF transporter
nikQ
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1

Gene: Mpe_A2800: Transmembrane component NikQ of energizing module of nickel ECF transporter
 
Leptothrix cholodnii SP-6
Transmembrane component NikQ of energizing module of nickel ECF transporter
nikO
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1

Gene: Mpe_A2799: ATPase component NikO of energizing module of nickel ECF transporter
 
Leptothrix cholodnii SP-6
ATPase component NikO of energizing module of nickel ECF transporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD