Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NikR - Burkholderia

Properties
Regulator type: Transcription factor
Regulator family: NikR
Regulation mode: repressor
Biological process: Nickel homeostasis
Effector: Nickel ion, (Ni2+)
Phylum: Proteobacteria/beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 2 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Burkholderia pseudomallei K96243
Burkholderia mallei ATCC 23344
Burkholderia sp. 383
Burkholderia cepacia AMMD
Burkholderia vietnamiensis G4
Burkholderia glumae BGR1
Burkholderia xenovorans LB400 2 2
Burkholderia phymatum STM815
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
hoxN
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
 
Burkholderia sp. 383
 
Burkholderia cepacia AMMD
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_5930: high-affinity nickel-transporter, NiCoT family
 
Burkholderia glumae BGR1
*
Burkholderia xenovorans LB400

Site:
position = -94
score = 6.44542
sequence = GTATGAT-(14)-GTATTAT

Gene: Bxe_C0038: high-affinity nickel-transporter, NiCoT family
 
Burkholderia phymatum STM815
high-affinity nickel-transporter, NiCoT family
 
CRON 2.
nikR
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
 
Burkholderia sp. 383
 
Burkholderia cepacia AMMD
 
Burkholderia vietnamiensis G4
 
Burkholderia glumae BGR1
*
Burkholderia xenovorans LB400

Site:
position = -74
score = 6.44542
sequence = ATAATAC-(14)-ATCATAC

Gene: Bxe_C0039: Nickel responsive regulator NikR, CopG family
 
Burkholderia phymatum STM815
Nickel responsive regulator NikR, CopG family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD