Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NrdR - Caulobacterales

Properties
Regulator type: Transcription factor
Regulator family: NrdR
Regulation mode: repressor
Biological process: Deoxyribonucleotide biosynthesis
Effector: Deoxyribonucleotides
Phylum: Proteobacteria/alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 21 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Caulobacter crescentus CB15 3 3
Caulobacter segnis ATCC 21756 3 3
Caulobacter sp. K31 3 3
Phenylobacterium zucineum HLK1 3 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nrdA
*
Caulobacter crescentus CB15

Site:
position = -88
score = 5.52213
sequence = CCACAAGATATAGCGG

Gene: CC3492: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Caulobacter segnis ATCC 21756

Site:
position = -72
score = 5.52213
sequence = CCACAAGATATAGCGG

Site:
position = -303
score = 5.74432
sequence = CCCCAACATCTTGTGG

Gene: Cseg_3903: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Caulobacter sp. K31

Site:
position = -94
score = 5.67878
sequence = CCACAAGATGTAGCGG

Gene: Caul_4661: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Phenylobacterium zucineum HLK1

Site:
position = -71
score = 5.54857
sequence = CCACAACATGTAGGGG

Gene: PHZ_c0341: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
 
CRON 2.
nrdB
*
Caulobacter crescentus CB15

Site:
position = -108
score = 5.58334
sequence = TCACAACATCTTGTGG

Site:
position = -76
score = 3.38218
sequence = CCACTAGATGAACCGA

Gene: CC0260: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
*
Caulobacter segnis ATCC 21756

Site:
position = -129
score = 3.90243
sequence = CTCCTCTATCTTGTGG

Site:
position = -98
score = 4.72275
sequence = ACACTAGATGTGGTGG

Gene: Cseg_3897: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
*
Caulobacter sp. K31

Site:
position = -87
score = 3.70634
sequence = CCACTAGATGCGGCCG

Site:
position = -118
score = 5.66871
sequence = CCACAACATGTTGTGT

Gene: Caul_4709: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
*
Phenylobacterium zucineum HLK1

Site:
position = -89
score = 3.48604
sequence = ACTCTAGATGCGGCGT

Site:
position = -57
score = 5.45484
sequence = CCACAAGATGTTGCGT

Gene: PHZ_c0344: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
CRON 3.
nrdJ
*
Caulobacter crescentus CB15

Site:
position = -44
score = 4.35359
sequence = CCGCAACATCTATTGA

Site:
position = -76
score = 5.59182
sequence = CTTCAACATCTTGTGG

Gene: CC1889: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Caulobacter segnis ATCC 21756

Site:
position = -134
score = 4.35359
sequence = CCGCAACATCTATTGA

Site:
position = -166
score = 5.59182
sequence = CTTCAACATCTTGTGG

Gene: Cseg_2178: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Caulobacter sp. K31

Site:
position = -118
score = 5.59182
sequence = CTTCAACATCTTGTGG

Site:
position = -86
score = 3.62827
sequence = ACCCCACATCTATTGA

Gene: Caul_2560: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Phenylobacterium zucineum HLK1

Site:
position = -61
score = 4.87479
sequence = CCCCAACATCTATTGC

Site:
position = -93
score = 3.24628
sequence = AGTCGATATGTTGGGG

Gene: PHZ_c1855: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD