Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NrdR - Rhizobiales

Properties
Regulator type: Transcription factor
Regulator family: NrdR
Regulation mode: repressor
Biological process: Deoxyribonucleotide biosynthesis
Effector: Deoxyribonucleotides
Phylum: Proteobacteria/alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 39 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Sinorhizobium meliloti 1021 1 1
Rhizobium sp. NGR234 1 1
Rhizobium leguminosarum bv. viciae 3841 5 2
Rhizobium etli CFN 42 5 2
Agrobacterium tumefaciens str. C58 (Cereon) 5 2
Mesorhizobium sp. BNC1 2 2
Mesorhizobium loti MAFF303099 1 1
Brucella melitensis 16M 5 2
Bartonella quintana str. Toulouse 4 1
Rhodopseudomonas palustris CGA009 1 1
Bradyrhizobium japonicum USDA 110 3 2
Bradyrhizobium sp. BTAi1 1 1
Nitrobacter winogradskyi Nb-255 3 2
Azorhizobium caulinodans ORS 571 1 1
Xanthobacter autotrophicus Py2 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nrdH
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -508
score = 4.96609
sequence = GTACCATATCTAGTGT

Gene: RL4261: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
*
Rhizobium etli CFN 42

Site:
position = -486
score = 5.07095
sequence = GTACTATATCTAGTGT

Gene: RHE_CH03718: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -534
score = 5.0023
sequence = ATACTATATGTGGTGT

Gene: Atu0068: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
*
Brucella melitensis 16M

Site:
position = -555
score = 4.95902
sequence = CTACCATATCTTGTGT

Gene: BMEII0932: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
*
Bartonella quintana str. Toulouse

Site:
position = -523
score = 5.35829
sequence = ATACTATATATAGTAT

Gene: BQ01800: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
nrdI
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL4260: Ribonucleotide reductase stimulatory protein NrdI
 
Rhizobium etli CFN 42

Gene: RHE_CH03717: Ribonucleotide reductase stimulatory protein NrdI
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu0069: Ribonucleotide reductase stimulatory protein NrdI
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M

Gene: BMEII0931: Ribonucleotide reductase stimulatory protein NrdI
 
Bartonella quintana str. Toulouse

Gene: BQ01810: Ribonucleotide reductase stimulatory protein NrdI
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
Ribonucleotide reductase stimulatory protein NrdI
nrdE
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL4259: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
 
Rhizobium etli CFN 42

Gene: RHE_CH03716: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu0070: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M

Gene: BMEII0930: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
 
Bartonella quintana str. Toulouse

Gene: BQ01820: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
nrdF
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL4258: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
 
Rhizobium etli CFN 42

Gene: RHE_CH03715: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu0071: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M

Gene: BMEII0929: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
 
Bartonella quintana str. Toulouse

Gene: BQ01830: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
 
CRON 2.
nrdA
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)
*
Mesorhizobium sp. BNC1

Site:
position = -310
score = 3.92744
sequence = CTACTAAATATAGCCC

Gene: Meso_2703: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009
*
Bradyrhizobium japonicum USDA 110

Site:
position = -20
score = 3.25101
sequence = TTCGCATATATGGTGG

Site:
position = -51
score = 4.50982
sequence = CTTCTATATGTGGTGT

Gene: bll0007: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
 
Bradyrhizobium sp. BTAi1
*
Nitrobacter winogradskyi Nb-255

Site:
position = -337
score = 4.81346
sequence = CTACTAAATATAGTGG

Gene: Nwi_2888: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
nrdB
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1

Gene: Meso_2702: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110

Gene: bll0006: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Bradyrhizobium sp. BTAi1
 
Nitrobacter winogradskyi Nb-255

Gene: Nwi_2887: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
CRON 3.
nrdJ
*
Sinorhizobium meliloti 1021

Site:
position = -130
score = 4.45838
sequence = TCACAAGATACAGGAT

Site:
position = -407
score = 4.84824
sequence = ACACAAGATATAGCGC

Site:
position = -161
score = 5.49507
sequence = ATACTATATTTAGTGT

Gene: SMc01237: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Rhizobium sp. NGR234

Site:
position = -155
score = 5.49507
sequence = ATACTATATTTAGTGT

Site:
position = -400
score = 4.84824
sequence = ACACAAGATATAGCGC

Site:
position = -124
score = 4.24231
sequence = CCACAAGATACTGGAG

Gene: NGR_c15550: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -175
score = 5.49507
sequence = ATACTATATTTAGTGT

Site:
position = -144
score = 4.43502
sequence = CCACAAGATACAGGAA

Site:
position = -420
score = 4.70089
sequence = CCACAACATGTTGTGG

Gene: RL1945: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Rhizobium etli CFN 42

Site:
position = -411
score = 4.70089
sequence = CCACAACATGTTGTGG

Site:
position = -167
score = 5.30133
sequence = ATACTATATTTAGCGT

Site:
position = -136
score = 4.43502
sequence = CCACAAGATACAGGAA

Gene: RHE_CH01753: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -416
score = 4.96956
sequence = ACACAATATCTTGTGG

Site:
position = -296
score = 4.57009
sequence = TCTCCATATTTAGCGT

Site:
position = -170
score = 5.30231
sequence = ACACTATATATAGTAG

Site:
position = -137
score = 4.16909
sequence = ACACGAGATACAGGGA

Gene: Atu1733: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Mesorhizobium sp. BNC1

Site:
position = -530
score = 5.23431
sequence = ACACAATATCTAGCGT

Site:
position = -284
score = 4.72699
sequence = ATGCTATATTTAGCGT

Gene: Meso_1332: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Mesorhizobium loti MAFF303099

Site:
position = -360
score = 4.64023
sequence = ACACAAGATGTTGGGG

Site:
position = -113
score = 5.49507
sequence = ATACTATATTTAGTGT

Gene: mll0136: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Brucella melitensis 16M

Site:
position = -537
score = 4.94739
sequence = GCACAATATCTAGCGT

Site:
position = -279
score = 5.28103
sequence = ACACAAGATTTAGTAT

Site:
position = -31
score = 4.5173
sequence = CTACTATATATAGAAC

Gene: BMEI0943: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
 
Bartonella quintana str. Toulouse
*
Rhodopseudomonas palustris CGA009

Site:
position = -409
score = 5.0581
sequence = CCACCACATTTAGTAT

Gene: RPA2977: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Bradyrhizobium japonicum USDA 110

Site:
position = -492
score = 5.37659
sequence = CCACCATATTTAGTAT

Gene: bll4274: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Bradyrhizobium sp. BTAi1

Site:
position = -320
score = 4.56717
sequence = CCACTAGATGTGGGGG

Site:
position = -546
score = 4.92439
sequence = CCCCCATATTTAGTGT

Gene: BBta_4237: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Nitrobacter winogradskyi Nb-255

Site:
position = -532
score = 5.49873
sequence = CCACCATATTTAGTGT

Gene: Nwi_1571: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Azorhizobium caulinodans ORS 571

Site:
position = -262
score = 5.07454
sequence = TCACTATATTTAGTAG

Gene: AZC_1268: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Xanthobacter autotrophicus Py2

Site:
position = -273
score = 5.28921
sequence = CCACCATATGTAGTAT

Gene: Xaut_4674: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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