Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NrdR - Xanthomonadales

Properties
Regulator type: Transcription factor
Regulator family: NrdR
Regulation mode: repressor
Biological process: Deoxyribonucleotide biosynthesis
Effector: Deoxyribonucleotides
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 9 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Xylella fastidiosa 9a5c 4 1
Xanthomonas axonopodis pv. citri str. 306 4 1
Xanthomonas campestris pv. campestris str. ATCC 33913 4 1
Stenotrophomonas maltophilia K279a 6 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nrdA1
 
Xylella fastidiosa 9a5c
 
Xanthomonas axonopodis pv. citri str. 306
 
Xanthomonas campestris pv. campestris str. ATCC 33913
*
Stenotrophomonas maltophilia K279a

Site:
position = -274
score = 5.78798
sequence = CCCCACTATCTTGTGG

Gene: Smlt0247: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
nrdB1
 
Xylella fastidiosa 9a5c
 
Xanthomonas axonopodis pv. citri str. 306
 
Xanthomonas campestris pv. campestris str. ATCC 33913
 
Stenotrophomonas maltophilia K279a

Gene: Smlt0248: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
CRON 2.
nrdA
*
Xylella fastidiosa 9a5c

Site:
position = -391
score = 5.51768
sequence = CCCCATTATCTTGTGG

Site:
position = -423
score = 5.01407
sequence = TCACAGCATTTTGTGT

Gene: XF1196: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Xanthomonas axonopodis pv. citri str. 306

Site:
position = -407
score = 4.15844
sequence = TTCCTACATTTGGTGT

Site:
position = -375
score = 5.63013
sequence = CCCCACTATCTTGGGG

Gene: XAC4075: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Xanthomonas campestris pv. campestris str. ATCC 33913

Site:
position = -414
score = 4.56872
sequence = TTCCCACATTATGTGT

Site:
position = -382
score = 5.63013
sequence = CCCCACTATCTTGGGG

Gene: XCC3986: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Stenotrophomonas maltophilia K279a

Site:
position = -160
score = 5.48311
sequence = CCCCACTATGTTGTGG

Site:
position = -192
score = 4.82663
sequence = TTACCGCATCTTGTGT

Gene: Smlt2842: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
nrdB
 
Xylella fastidiosa 9a5c

Gene: XF1197: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC4074: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC3985: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Stenotrophomonas maltophilia K279a

Gene: Smlt2841: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
XF1198
 
Xylella fastidiosa 9a5c

Gene: XF1198: putative flavodoxin
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC4073: putative flavodoxin
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC3984: putative flavodoxin
 
Stenotrophomonas maltophilia K279a

Gene: Smlt2840: putative flavodoxin
putative flavodoxin
trxA
 
Xylella fastidiosa 9a5c

Gene: XF1199: Thioredoxin
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC4072: Thioredoxin
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC3983: Thioredoxin
 
Stenotrophomonas maltophilia K279a

Gene: Smlt2839: Thioredoxin
Thioredoxin
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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