Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NrdR - Pseudomonadaceae

Properties
Regulator type: Transcription factor
Regulator family: NrdR
Regulation mode: repressor
Biological process: Deoxyribonucleotide biosynthesis
Effector: Deoxyribonucleotides
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 35 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudomonas aeruginosa PAO1 7 4
Pseudomonas entomophila L48 3 3
Pseudomonas putida KT2440 3 3
Pseudomonas syringae pv. tomato str. DC3000 3 3
Pseudomonas fluorescens Pf-5 3 3
Pseudomonas mendocina ymp 2 2
Pseudomonas stutzeri A1501 6 3
Azotobacter vinelandii AvOP 3 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nrdA
*
Pseudomonas aeruginosa PAO1

Site:
position = -398
score = 4.8741
sequence = CCCCTATATCTTGGGT

Site:
position = -194
score = 5.0483
sequence = CCACTAGGTATTGTGT

Gene: PA1156: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Pseudomonas entomophila L48

Site:
position = -432
score = 3.38984
sequence = CCGCATTATCTTGTAT

Site:
position = -401
score = 5.44143
sequence = CCACTAGATGTTGGGT

Gene: PSEEN1337: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Pseudomonas putida KT2440

Site:
position = -428
score = 3.38984
sequence = CCGCATTATCTTGTAT

Site:
position = -397
score = 5.61153
sequence = CCACTAGATATAGGGG

Gene: PP1179: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -352
score = 4.96218
sequence = ACCCTACATGTAGGGT

Gene: PSPTO1671: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Pseudomonas fluorescens Pf-5

Site:
position = -375
score = 4.57877
sequence = TCCCTATATCTAGGGT

Gene: PFL_4476: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Pseudomonas mendocina ymp

Site:
position = -407
score = 5.12509
sequence = CCACCAGATATTGGGT

Site:
position = -214
score = 5.08567
sequence = CCACTATATGTAGTAG

Gene: Pmen_3151: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Pseudomonas stutzeri A1501

Site:
position = -202
score = 5.21223
sequence = ACACAACATATTGTGT

Site:
position = -392
score = 5.12427
sequence = CCCCTAGATGTTGGGT

Gene: PST_1637: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Azotobacter vinelandii AvOP

Site:
position = -163
score = 5.42064
sequence = CCACTAGATGTTGTGG

Site:
position = -352
score = 5.02149
sequence = CCCCTACATATAGGGA

Gene: Avin_33290: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
nrdB
 
Pseudomonas aeruginosa PAO1

Gene: PA1155: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
*
Pseudomonas entomophila L48

Site:
position = -453
score = 4.27906
sequence = ACACCATATGCTGTGG

Site:
position = -422
score = 4.8414
sequence = ACACAACATATAGGAT

Gene: PSEEN1335: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
*
Pseudomonas putida KT2440

Site:
position = -343
score = 4.68858
sequence = GCACAACATATAGGTT

Site:
position = -375
score = 3.82803
sequence = ACACCATATGATGTGC

Gene: PP1177: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -447
score = 4.38541
sequence = TCACTATATGCTGCGC

Site:
position = -415
score = 3.93729
sequence = ACACTACATAAGGGAT

Gene: PSPTO1661: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
*
Pseudomonas fluorescens Pf-5

Site:
position = -434
score = 4.06353
sequence = ACACAACATCTAGTAA

Gene: PFL_4524: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Pseudomonas mendocina ymp

Gene: Pmen_3152: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Pseudomonas stutzeri A1501

Gene: PST_1636: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Azotobacter vinelandii AvOP

Gene: Avin_33300: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
CRON 2.
topA
*
Pseudomonas aeruginosa PAO1

Site:
position = -76
score = 5.68694
sequence = CCACTATATATAGCGG

Gene: PA3011: DNA topoisomerase I (EC 5.99.1.2)
*
Pseudomonas entomophila L48

Site:
position = -73
score = 5.68694
sequence = CCACTATATATAGCGG

Gene: PSEEN3725: DNA topoisomerase I (EC 5.99.1.2)
*
Pseudomonas putida KT2440

Site:
position = -73
score = 5.68694
sequence = CCACTATATATAGCGG

Gene: PP2139: DNA topoisomerase I (EC 5.99.1.2)
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -71
score = 5.68694
sequence = CCACTATATATAGCGT

Gene: PSPTO3514: DNA topoisomerase I (EC 5.99.1.2)
*
Pseudomonas fluorescens Pf-5

Site:
position = -72
score = 5.68694
sequence = CCACTATATATAGCGG

Gene: PFL_1942: DNA topoisomerase I (EC 5.99.1.2)
*
Pseudomonas mendocina ymp

Site:
position = -69
score = 5.68694
sequence = CCACTATATATAGCGG

Gene: Pmen_1583: DNA topoisomerase I (EC 5.99.1.2)
*
Pseudomonas stutzeri A1501

Site:
position = -241
score = 5.68694
sequence = CCACTATATATAGCGG

Gene: PST_1729: DNA topoisomerase I (EC 5.99.1.2)
*
Azotobacter vinelandii AvOP

Site:
position = -222
score = 5.39327
sequence = CCACTATATATAGCGC

Gene: Avin_14470: DNA topoisomerase I (EC 5.99.1.2)
DNA topoisomerase I (EC 5.99.1.2)
 
CRON 3.
nrdD
*
Pseudomonas aeruginosa PAO1

Site:
position = -57
score = 5.10769
sequence = CCACAACATATTGTTG

Site:
position = -26
score = 4.53379
sequence = ACACATCATGTTGTGG

Gene: PA1920: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
*
Pseudomonas stutzeri A1501

Site:
position = -58
score = 4.57793
sequence = TCACACCATATTGTGG

Site:
position = -27
score = 4.41333
sequence = ACACTACATATGGTTA

Gene: PST_3509: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
 
Azotobacter vinelandii AvOP
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
PST_3508
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501

Gene: PST_3508: hypothetical protein
 
Azotobacter vinelandii AvOP
hypothetical protein
nrdG
 
Pseudomonas aeruginosa PAO1

Gene: PA1919: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501

Gene: PST_3507: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Azotobacter vinelandii AvOP
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
CRON 4.
nrdJb
*
Pseudomonas aeruginosa PAO1

Site:
position = -38
score = 4.5837
sequence = ACACAAGATATTGATT

Site:
position = -7
score = 4.62243
sequence = TAACTAGATGTTGCGT

Gene: PA5497: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501

Gene: PST_0109: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
 
Azotobacter vinelandii AvOP

Gene: Avin_00810: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
nrdJa
 
Pseudomonas aeruginosa PAO1

Gene: PA5496: Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1)
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501

Gene: PST_0110: Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1)
 
Azotobacter vinelandii AvOP

Gene: Avin_00800: Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1)
Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD