Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NrdR - Oceanospirillales/Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: NrdR
Regulation mode: repressor
Biological process: Deoxyribonucleotide biosynthesis
Effector: Deoxyribonucleotides
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 39 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Hahella chejuensis KCTC 2396 4 2
Marinobacter aqueolei 4 2
Marinobacter sp. ELB17 4 2
Oceanobacter sp. RED65 3 1
Oceanospirillum sp. MED92 3 1
Marinomonas sp. MWYL1 3 1
Saccharophagus degradans 2-40 3 2
Teredinibacter turnerae T7901 4 2
Cellvibrio japonicus Ueda107 2 1
Chromohalobacter salexigens DSM 3043 2 1
Reinekea sp. MED297 4 2
Alcanivorax borkumensis SK2 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nrdJa
*
Hahella chejuensis KCTC 2396

Site:
position = -160
score = 4.96013
sequence = GCACAACATATTGTGG

Site:
position = -330
score = 4.59255
sequence = TCGCCATATATAGGGT

Gene: HCH_04895: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Marinobacter aqueolei

Site:
position = -118
score = 5.43132
sequence = ACACCATATATAGTGA

Site:
position = -284
score = 4.58587
sequence = ACACTATATCCTGTTA

Site:
position = -252
score = 4.68173
sequence = AGCCCATATATAGGGT

Gene: Maqu_1085: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Marinobacter sp. ELB17

Site:
position = -175
score = 3.36164
sequence = GACCTATATGTAGGAC

Site:
position = -207
score = 4.5158
sequence = ACACTACATCCTGTTA

Gene: MELB17_11133: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
*
Teredinibacter turnerae T7901

Site:
position = -22
score = 5.17513
sequence = ACACCATATATTGGGG

Gene: TERTU_1637: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
*
Reinekea sp. MED297

Site:
position = -165
score = 4.76753
sequence = CCACTACAGGTTGTGT

Site:
position = -133
score = 4.51736
sequence = ACACTACAGGTAGTGC

Gene: MED297_14097: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
 
Alcanivorax borkumensis SK2
Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
nrdJb
 
Hahella chejuensis KCTC 2396

Gene: HCH_04896: Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1)
 
Marinobacter aqueolei

Gene: Maqu_1084: Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1)
 
Marinobacter sp. ELB17

Gene: MELB17_11128: Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1)
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901

Gene: TERTU_1636: Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1)
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297

Gene: MED297_14092: Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1)
 
Alcanivorax borkumensis SK2
Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1)
 
CRON 2.
nrdA
*
Hahella chejuensis KCTC 2396

Site:
position = -353
score = 4.62874
sequence = AAACCATATATTGTGC

Site:
position = -385
score = 4.44349
sequence = ACGCTACATCTAGTAT

Gene: HCH_06929: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Marinobacter aqueolei

Site:
position = -280
score = 3.7129
sequence = CGGCCCTATATAGTGA

Site:
position = -248
score = 4.91571
sequence = CTACCATATATTGTGA

Gene: Maqu_3857: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Marinobacter sp. ELB17

Site:
position = -383
score = 4.17024
sequence = ATACCAGATGTAGTGA

Site:
position = -415
score = 3.9672
sequence = TTCCCGTATATAGTGT

Gene: MELB17_00905: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Oceanobacter sp. RED65

Site:
position = -170
score = 4.58808
sequence = ACCCATTATCTTGTGT

Site:
position = -202
score = 5.15662
sequence = ACACTATATATGGGGT

Gene: RED65_10534: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Oceanospirillum sp. MED92

Site:
position = -190
score = 4.91869
sequence = TCACTATATTTAGTGT

Site:
position = -159
score = 4.87923
sequence = GTACTACATATAGTGT

Gene: MED92_15538: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Marinomonas sp. MWYL1

Site:
position = -87
score = 5.56938
sequence = ACACTACATATAGTGT

Site:
position = -55
score = 4.63804
sequence = ACACTACATACAGTAA

Gene: Mmwyl1_2996: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Saccharophagus degradans 2-40

Site:
position = -188
score = 5.42675
sequence = CCACTATATATAGTGG

Site:
position = -451
score = 3.72806
sequence = CCGCATTATCTTGTAT

Site:
position = -420
score = 4.97112
sequence = CCCCCATATATGGTGT

Gene: Sde_2458: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Teredinibacter turnerae T7901

Site:
position = -292
score = 3.72806
sequence = CCGCATTATCTTGTAT

Site:
position = -261
score = 4.93832
sequence = CCCCAATATATGGTGT

Gene: TERTU_0730: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Cellvibrio japonicus Ueda107

Site:
position = -255
score = 5.2488
sequence = CCACTATATCTAGTGG

Site:
position = -456
score = 4.19034
sequence = CCCCTAGATATAGGTT

Site:
position = -487
score = 3.60027
sequence = CCGCATTATCTTGTAG

Gene: CJA_1569: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Chromohalobacter salexigens DSM 3043

Site:
position = -206
score = 3.33192
sequence = CGGCTCTATCTTGTGC

Site:
position = -175
score = 4.98825
sequence = CCCCCATATATAGGGA

Gene: Csal_0668: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Reinekea sp. MED297

Site:
position = -366
score = 4.86549
sequence = GCCCTATATGTTGTGT

Site:
position = -397
score = 4.7928
sequence = ACACAATATATGGTTT

Gene: MED297_18987: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Alcanivorax borkumensis SK2

Site:
position = -442
score = 5.4615
sequence = ACACTATATCTAGTGT

Site:
position = -164
score = 5.07965
sequence = ACACAACATCTTGTGG

Site:
position = -297
score = 4.67672
sequence = CCCCAACATGTTGGGT

Gene: ABO_0711: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
nrdB
 
Hahella chejuensis KCTC 2396

Gene: HCH_06928: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Marinobacter aqueolei

Gene: Maqu_3856: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Marinobacter sp. ELB17

Gene: MELB17_00910: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Oceanobacter sp. RED65

Gene: RED65_10539: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Oceanospirillum sp. MED92

Gene: MED92_15533: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_2997: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
*2
Saccharophagus degradans 2-40

Site:
position = -63
score = 4.76751
sequence = CACCTATATATAGTGG

Site:
position = -32
score = 4.38668
sequence = CAACCACATATAGTTA

Gene: Sde_3460: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)

Gene: Sde_2459: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Teredinibacter turnerae T7901

Gene: TERTU_0729: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Cellvibrio japonicus Ueda107

Gene: CJA_1568: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_0667: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Reinekea sp. MED297

Gene: MED297_18982: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Alcanivorax borkumensis SK2

Gene: ABO_0710: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
yfaE
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65

Gene: RED65_10544: Ferredoxin
 
Oceanospirillum sp. MED92

Gene: MED92_15528: Ferredoxin
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_2998: Ferredoxin
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Ferredoxin
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD