Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NrdR - Psychromonadaceae/Aeromonadales

Properties
Regulator type: Transcription factor
Regulator family: NrdR
Regulation mode: repressor
Biological process: Deoxyribonucleotide biosynthesis
Effector: Deoxyribonucleotides
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 26 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Psychromonas ingrahamii 37 6 3
Psychromonas sp. CNPT3 4 2
Moritella sp. PE36 5 2
Aeromonas hydrophila subsp. hydrophila ATCC 7966 7 3
Aeromonas salmonicida subsp. salmonicida A449 8 3
Tolumonas auensis DSM 9187 4 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nrdA
*
Psychromonas ingrahamii 37

Site:
position = -90
score = 5.56065
sequence = ACACAATATGTTGTGT

Site:
position = -122
score = 4.7354
sequence = AAGCTTTATCTTGTGT

Gene: Ping_1112: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
 
Psychromonas sp. CNPT3

Gene: PCNPT3_04466: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Moritella sp. PE36

Site:
position = -117
score = 4.71561
sequence = TCCCTCTATCTTGTAT

Site:
position = -85
score = 5.49714
sequence = ACACTACATCTTGTGT

Gene: PE36_09743: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Site:
position = -79
score = 5.35804
sequence = ACACTATATCTTGTGA

Site:
position = -110
score = 4.17242
sequence = CCTCACTATCTTGTAG

Gene: AHA_2333: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Aeromonas salmonicida subsp. salmonicida A449

Site:
position = -146
score = 4.17242
sequence = CCTCACTATCTTGTAG

Site:
position = -115
score = 5.35804
sequence = ACACTATATCTTGTGA

Gene: ASA_1946: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Tolumonas auensis DSM 9187

Site:
position = -75
score = 4.49211
sequence = ATTCTTTATGTTGTAT

Site:
position = -43
score = 5.25638
sequence = GCACTACATATTGTGT

Gene: Tola_1429: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
nrdB
*
Psychromonas ingrahamii 37

Site:
position = -318
score = 5.70363
sequence = ACACTATATCTTGTGT

Gene: Ping_1109: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Psychromonas sp. CNPT3

Gene: PCNPT3_04461: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Moritella sp. PE36

Gene: PE36_09738: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Gene: AHA_2334: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Aeromonas salmonicida subsp. salmonicida A449

Gene: ASA_1945: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Tolumonas auensis DSM 9187

Gene: Tola_1428: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
yfaE
 
Psychromonas ingrahamii 37

Gene: Ping_1108: Ferredoxin
 
Psychromonas sp. CNPT3

Gene: PCNPT3_04456: Ferredoxin
 
Moritella sp. PE36

Gene: PE36_09733: Ferredoxin
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Gene: AHA_2335: Ferredoxin
 
Aeromonas salmonicida subsp. salmonicida A449

Gene: ASA_1944: Ferredoxin
 
Tolumonas auensis DSM 9187

Gene: Tola_1427: Ferredoxin
Ferredoxin
 
CRON 2.
nrdJa
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Site:
position = -96
score = 5.12425
sequence = ATACTACATATAGTGT

Gene: AHA_0870: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Aeromonas salmonicida subsp. salmonicida A449

Site:
position = -95
score = 5.47372
sequence = ATACTATATATTGTGT

Site:
position = -64
score = 4.46683
sequence = TCACTATTAGTTGTGT

Gene: ASA_3420: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
 
Tolumonas auensis DSM 9187
Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
nrdJb
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Gene: AHA_0871: Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1)
 
Aeromonas salmonicida subsp. salmonicida A449

Gene: ASA_3419: Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1)
 
Tolumonas auensis DSM 9187
Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1)
 
CRON 3.
nrdD
*2
Psychromonas ingrahamii 37

Gene: Ping_0740: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)

Site:
position = -91
score = 5.19681
sequence = CCACTAGATGTTGTGT

Gene: Ping_0739: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) (fragment)
*
Psychromonas sp. CNPT3

Site:
position = -70
score = 4.95901
sequence = TATCTATATGTAGTGT

Site:
position = -38
score = 4.88633
sequence = CCACAAGATGTAGTGT

Gene: PCNPT3_10895: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Moritella sp. PE36

Site:
position = -85
score = 5.58124
sequence = ACACTACATATTGTGT

Site:
position = -54
score = 5.05096
sequence = CACCTATATATAGTGT

Gene: PE36_17942: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Site:
position = -202
score = 4.11913
sequence = ACACCACATATAGGGC

Site:
position = -171
score = 5.2974
sequence = TCCCTATATGTTGTGT

Gene: AHA_1231: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Aeromonas salmonicida subsp. salmonicida A449

Site:
position = -171
score = 5.13437
sequence = CACCTATATGTTGTGT

Site:
position = -202
score = 4.27246
sequence = ACACCACATATAGGGA

Gene: ASA_1222: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Tolumonas auensis DSM 9187

Site:
position = -96
score = 4.09183
sequence = TCGCAATATATAGTTA

Site:
position = -65
score = 4.86513
sequence = GAACTATATATAGTAT

Gene: Tola_0418: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
ASA_1223
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966
 
Aeromonas salmonicida subsp. salmonicida A449

Gene: ASA_1223: hypothetical protein
 
Tolumonas auensis DSM 9187
hypothetical protein
nrdG
 
Psychromonas ingrahamii 37

Gene: Ping_0741: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Psychromonas sp. CNPT3

Gene: PCNPT3_10890: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Moritella sp. PE36

Gene: PE36_17947: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Gene: AHA_1232: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Aeromonas salmonicida subsp. salmonicida A449

Gene: ASA_1224: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Tolumonas auensis DSM 9187

Gene: Tola_0381: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
CRON 4.
nrdB2
 
Psychromonas ingrahamii 37
*
Psychromonas sp. CNPT3

Site:
position = -76
score = 5.62022
sequence = ACACAATATATTGTGT

Gene: PCNPT3_00476: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966
 
Aeromonas salmonicida subsp. salmonicida A449
 
Tolumonas auensis DSM 9187
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
nrdA2
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3

Gene: PCNPT3_00471: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966
 
Aeromonas salmonicida subsp. salmonicida A449
 
Tolumonas auensis DSM 9187
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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