Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NrdR - Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: NrdR
Regulation mode: repressor
Biological process: Deoxyribonucleotide biosynthesis
Effector: Deoxyribonucleotides
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 24 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudoalteromonas atlantica T6c 3 1
Alteromonas macleodii 'Deep ecotype' 5 2
Glaciecola sp. HTCC2999 3 1
Colwellia psychrerythraea 34H 5 2
Alteromonadales bacterium TW-7 3 1
Pseudoalteromonas haloplanktis TAC125 3 1
Pseudoalteromonas tunicata D2 3 1
Idiomarina baltica OS145 3 1
Idiomarina loihiensis L2TR 5 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nrdG
 
Pseudoalteromonas atlantica T6c
*
Alteromonas macleodii 'Deep ecotype'

Site:
position = -62
score = 4.78473
sequence = ACACAACATATAGTTA

Site:
position = -94
score = 4.98171
sequence = ATACAACATATAGTGT

Gene: MADE_03883: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Glaciecola sp. HTCC2999
*
Colwellia psychrerythraea 34H

Site:
position = -51
score = 5.29175
sequence = ATACTATATATTGTGC

Site:
position = -125
score = 5.617
sequence = ACACTATATATTGTGC

Gene: CPS_0093: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
*
Idiomarina loihiensis L2TR

Site:
position = -19
score = 3.95884
sequence = TAACAATATATGGTGT

Site:
position = -50
score = 4.85841
sequence = GCACAATATGTAGTGA

Gene: IL0187: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_03882: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_0092: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR

Gene: IL0188: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
 
CRON 2.
nrdA
*
Pseudoalteromonas atlantica T6c

Site:
position = -145
score = 4.96306
sequence = CCTCATTATCTTGTGT

Site:
position = -344
score = 5.24173
sequence = ACACTATATATCGTGA

Gene: Patl_2473: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Alteromonas macleodii 'Deep ecotype'

Site:
position = -313
score = 5.10832
sequence = CCTCACTATCTTGTGT

Site:
position = -345
score = 4.87598
sequence = CCACCAGATATTGGGT

Gene: MADE_02125: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Glaciecola sp. HTCC2999

Site:
position = -188
score = 5.24341
sequence = CCACATTATCTTGTGC

Site:
position = -221
score = 4.85371
sequence = ACACATCATCTAGTGG

Gene: GHTCC_010100006642: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Colwellia psychrerythraea 34H

Site:
position = -158
score = 5.10152
sequence = ACCCTAGATATTGTGC

Site:
position = -189
score = 5.10832
sequence = CCTCACTATCTTGTGT

Gene: CPS_2328: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Alteromonadales bacterium TW-7

Site:
position = -172
score = 5.45762
sequence = CCACACTATCTTGTGA

Site:
position = -141
score = 5.34912
sequence = ACACCAGATATTGTGG

Gene: ATW7_07067: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -141
score = 5.34912
sequence = ACACCAGATATTGTGG

Site:
position = -172
score = 5.45762
sequence = CCACACTATCTTGTGA

Gene: PSHAa1418: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Pseudoalteromonas tunicata D2

Site:
position = -116
score = 5.0911
sequence = CCCCTATATATAGTGT

Site:
position = -147
score = 5.39999
sequence = CCACTCTATCTTGTGA

Gene: PTD2_19892: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Idiomarina baltica OS145

Site:
position = -96
score = 5.21216
sequence = CTACTAGATATTGTGT

Site:
position = -55
score = 5.65972
sequence = ACACAATATCTTGTGG

Gene: OS145_00325: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Idiomarina loihiensis L2TR

Site:
position = -54
score = 5.37459
sequence = GCACAATATCTTGTGG

Site:
position = -95
score = 5.57387
sequence = ACACTAGATATTGTGT

Gene: IL1363: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
nrdB
 
Pseudoalteromonas atlantica T6c

Gene: Patl_2474: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_02126: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100006637: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Colwellia psychrerythraea 34H

Gene: CPS_2327: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Alteromonadales bacterium TW-7

Gene: ATW7_07072: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa1417: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_19897: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Idiomarina baltica OS145

Gene: OS145_00330: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Idiomarina loihiensis L2TR

Gene: IL1364: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
yfaE
 
Pseudoalteromonas atlantica T6c

Gene: Patl_2475: Ferredoxin
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_02127: Ferredoxin
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100006632: Ferredoxin
 
Colwellia psychrerythraea 34H

Gene: CPS_2326: Ferredoxin
 
Alteromonadales bacterium TW-7

Gene: ATW7_07077: Ferredoxin
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa1416: Ferredoxin
 
Pseudoalteromonas tunicata D2

Gene: PTD2_19902: Ferredoxin
 
Idiomarina baltica OS145

Gene: OS145_00335: Ferredoxin
 
Idiomarina loihiensis L2TR

Gene: IL1365: Ferredoxin
Ferredoxin
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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