Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog BirA - Desulfuromonadales

Properties
Regulator type: Transcription factor
Regulator family: BirA
Regulation mode: repressor
Biological process: Biotin biosynthesis
Effector: Biotin
Phylum: Proteobacteria/delta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 15 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Geobacter metallireducens GS-15 6 2
Geobacter sulfurreducens PCA 6 2
Geobacter uraniumreducens Rf4 6 2
Geobacter sp. FRC-32 6 2
Geobacter sp. M21 6 2
Geobacter lovleyi SZ 5 2
Pelobacter propionicus DSM 2379 3 1
Pelobacter carbinolicus str. DSM 2380 7 2
Desulfuromonas acetoxidans DSM 684
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
bioB
*
Geobacter metallireducens GS-15

Site:
position = -75
score = 7.93146
sequence = TTGTTAACC-(14)-AGTTGACAA

Gene: Gmet_1582: Biotin synthase (EC 2.8.1.6)
*
Geobacter sulfurreducens PCA

Site:
position = -79
score = 8.59468
sequence = TTGTCAACC-(14)-AGTTGACAA

Gene: GSU1584: Biotin synthase (EC 2.8.1.6)
*
Geobacter uraniumreducens Rf4

Site:
position = -74
score = 8.3816
sequence = TCGTCAACC-(14)-GGTTGACAA

Gene: Gura_2242: Biotin synthase (EC 2.8.1.6)
*
Geobacter sp. FRC-32

Site:
position = -74
score = 8.3816
sequence = TCGTCAACC-(14)-GGTTGACAA

Gene: Geob_3008: Biotin synthase (EC 2.8.1.6)
*
Geobacter sp. M21

Site:
position = -72
score = 8.3816
sequence = TCGTCAACC-(14)-GGTTGACAA

Gene: GM21_2164: Biotin synthase (EC 2.8.1.6)
*
Geobacter lovleyi SZ

Site:
position = -63
score = 9.02294
sequence = TTGTCAACC-(15)-GGTTGACAA

Gene: Glov_2370: Biotin synthase (EC 2.8.1.6)
 
Pelobacter propionicus DSM 2379

Gene: Ppro_1175: Biotin synthase (EC 2.8.1.6)
*
Pelobacter carbinolicus str. DSM 2380

Site:
position = -137
score = 8.40466
sequence = TTGTCAACC-(14)-TGTTGACAA

Gene: Pcar_1458: Biotin synthase (EC 2.8.1.6)
 
Desulfuromonas acetoxidans DSM 684
Biotin synthase (EC 2.8.1.6)
bioD
 
Geobacter metallireducens GS-15

Gene: Gmet_1581: Dethiobiotin synthetase (EC 6.3.3.3)
 
Geobacter sulfurreducens PCA

Gene: GSU1583: Dethiobiotin synthetase (EC 6.3.3.3)
 
Geobacter uraniumreducens Rf4

Gene: Gura_2243: Dethiobiotin synthetase (EC 6.3.3.3)
 
Geobacter sp. FRC-32

Gene: Geob_3009: Dethiobiotin synthetase (EC 6.3.3.3)
 
Geobacter sp. M21

Gene: GM21_2165: Dethiobiotin synthetase (EC 6.3.3.3)
 
Geobacter lovleyi SZ

Gene: Glov_2369: Dethiobiotin synthetase (EC 6.3.3.3)
 
Pelobacter propionicus DSM 2379

Gene: Ppro_1176: Dethiobiotin synthetase (EC 6.3.3.3)
 
Pelobacter carbinolicus str. DSM 2380

Gene: Pcar_1459: Dethiobiotin synthetase (EC 6.3.3.3)
 
Desulfuromonas acetoxidans DSM 684
Dethiobiotin synthetase (EC 6.3.3.3)
bioA
 
Geobacter metallireducens GS-15

Gene: Gmet_1580: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Geobacter sulfurreducens PCA

Gene: GSU1582: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Geobacter uraniumreducens Rf4

Gene: Gura_2244: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Geobacter sp. FRC-32

Gene: Geob_3010: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Geobacter sp. M21

Gene: GM21_2166: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Geobacter lovleyi SZ

Gene: Glov_2247: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Pelobacter propionicus DSM 2379

Gene: Ppro_1177: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Pelobacter carbinolicus str. DSM 2380

Gene: Pcar_1460: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Desulfuromonas acetoxidans DSM 684
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
CRON 2.
bioW
 
Geobacter metallireducens GS-15
 
Geobacter sulfurreducens PCA
 
Geobacter uraniumreducens Rf4
 
Geobacter sp. FRC-32
 
Geobacter sp. M21
 
Geobacter lovleyi SZ
 
Pelobacter propionicus DSM 2379
*
Pelobacter carbinolicus str. DSM 2380

Site:
position = -62
score = 8.22649
sequence = ATGTCAACC-(14)-TGTTGACAA

Gene: Pcar_1666: Pimeloyl-CoA synthase (EC 6.2.1.14)
 
Desulfuromonas acetoxidans DSM 684
Pimeloyl-CoA synthase (EC 6.2.1.14)
bioF
*
Geobacter metallireducens GS-15

Site:
position = -65
score = 8.3816
sequence = TTGTCAACC-(14)-GGTTGACGA

Gene: Gmet_0842: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
*
Geobacter sulfurreducens PCA

Site:
position = -87
score = 8.3816
sequence = TTGTCAACC-(14)-GGTTGACGA

Gene: GSU2629: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
*
Geobacter uraniumreducens Rf4

Site:
position = -94
score = 7.71838
sequence = TTGTTAACC-(14)-GGTTGACGA

Gene: Gura_3246: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
*
Geobacter sp. FRC-32

Site:
position = -90
score = 7.07703
sequence = TCGTTAACC-(14)-GGTTGACGA

Gene: Geob_2084: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
*
Geobacter sp. M21

Site:
position = -102
score = 8.3816
sequence = TTGTCAACC-(14)-GGTTGACGA

Gene: GM21_3430: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
*
Geobacter lovleyi SZ

Site:
position = -32
score = 7.93146
sequence = TTGTCAACT-(15)-GGTTAACAA

Gene: Glov_1662: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
*
Pelobacter propionicus DSM 2379

Site:
position = -42
score = 7.95333
sequence = TTGTCAACT-(14)-GGTTGACCA

Gene: Ppro_2093: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Pelobacter carbinolicus str. DSM 2380

Gene: Pcar_1665: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Desulfuromonas acetoxidans DSM 684
8-amino-7-oxononanoate synthase (EC 2.3.1.47)
bioH
 
Geobacter metallireducens GS-15

Gene: Gmet_0843: Biotin synthesis protein bioH
 
Geobacter sulfurreducens PCA

Gene: GSU2628: Biotin synthesis protein bioH
 
Geobacter uraniumreducens Rf4

Gene: Gura_3245: Biotin synthesis protein bioH
 
Geobacter sp. FRC-32

Gene: Geob_2085: Biotin synthesis protein bioH
 
Geobacter sp. M21

Gene: GM21_3429: Biotin synthesis protein bioH
 
Geobacter lovleyi SZ

Gene: Glov_1663: Biotin synthesis protein bioH
 
Pelobacter propionicus DSM 2379

Gene: Ppro_2092: Biotin synthesis protein bioH
 
Pelobacter carbinolicus str. DSM 2380

Gene: Pcar_1664: Biotin synthesis protein bioH
 
Desulfuromonas acetoxidans DSM 684
Biotin synthesis protein bioH
bioC
 
Geobacter metallireducens GS-15

Gene: Gmet_0844: Biotin synthesis protein bioC
 
Geobacter sulfurreducens PCA

Gene: GSU2627: Biotin synthesis protein bioC
 
Geobacter uraniumreducens Rf4

Gene: Gura_3244: Biotin synthesis protein bioC
 
Geobacter sp. FRC-32

Gene: Geob_2086: Biotin synthesis protein bioC
 
Geobacter sp. M21

Gene: GM21_3428: Biotin synthesis protein bioC
 
Geobacter lovleyi SZ

Gene: Glov_1664: Biotin synthesis protein bioC
 
Pelobacter propionicus DSM 2379

Gene: Ppro_2091: Biotin synthesis protein bioC
 
Pelobacter carbinolicus str. DSM 2380

Gene: Pcar_1663: Biotin synthesis protein bioC
 
Desulfuromonas acetoxidans DSM 684
Biotin synthesis protein bioC
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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