Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog BirA - Xanthomonadales

Properties
Regulator type: Transcription factor
Regulator family: BirA
Regulation mode: repressor
Biological process: Biotin biosynthesis
Effector: Biotin
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 5 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Xylella fastidiosa 9a5c
Xanthomonas axonopodis pv. citri str. 306 7 2
Xanthomonas campestris pv. campestris str. ATCC 33913 5 2
Stenotrophomonas maltophilia K279a 5 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG1040
 
Xylella fastidiosa 9a5c

Gene: XF0063: competence protein F
*
Xanthomonas axonopodis pv. citri str. 306

Site:
position = 16
score = 8.41861
sequence = CTGTCAACT-(16)-GGTTTACAG

Gene: XAC0389: competence protein F
*
Xanthomonas campestris pv. campestris str. ATCC 33913

Site:
position = 16
score = 8.41861
sequence = CTGTCAACT-(16)-GGTTTACAG

Gene: XCC0389: competence protein F
 
Stenotrophomonas maltophilia K279a

Gene: Smlt4454: competence protein F
competence protein F
 
CRON 2.
bioB
 
Xylella fastidiosa 9a5c

Gene: XF0064: Biotin synthase (EC 2.8.1.6)
*
Xanthomonas axonopodis pv. citri str. 306

Site:
position = -93
score = 8.41861
sequence = CTGTAAACC-(16)-AGTTGACAG

Gene: XAC0388: Biotin synthase (EC 2.8.1.6)
*
Xanthomonas campestris pv. campestris str. ATCC 33913

Site:
position = -93
score = 8.41861
sequence = CTGTAAACC-(16)-AGTTGACAG

Gene: XCC0388: Biotin synthase (EC 2.8.1.6)
*
Stenotrophomonas maltophilia K279a

Site:
position = -91
score = 8.20553
sequence = CCGTAAACC-(16)-GGTTGACAG

Gene: Smlt4459: Biotin synthase (EC 2.8.1.6)
Biotin synthase (EC 2.8.1.6)
bioF
 
Xylella fastidiosa 9a5c

Gene: XF1357: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC0387: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC0387: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Stenotrophomonas maltophilia K279a

Gene: Smlt4460: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
8-amino-7-oxononanoate synthase (EC 2.3.1.47)
XAC0386
 
Xylella fastidiosa 9a5c
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC0386: hypothetical protein
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC0386: hypothetical protein
 
Stenotrophomonas maltophilia K279a
hypothetical protein
bioH
 
Xylella fastidiosa 9a5c

Gene: XF1356: Biotin synthesis protein bioH
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC0385: Biotin synthesis protein bioH
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC0385: Biotin synthesis protein bioH
 
Stenotrophomonas maltophilia K279a

Gene: Smlt4461: Biotin synthesis protein bioH
Biotin synthesis protein bioH
XAC0384
 
Xylella fastidiosa 9a5c
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC0384: putative short chain dehydrogenase
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC0384: putative short chain dehydrogenase
 
Stenotrophomonas maltophilia K279a

Gene: Smlt4462: putative short chain dehydrogenase
putative short chain dehydrogenase
bioC
 
Xylella fastidiosa 9a5c

Gene: XF2099: Biotin synthesis protein bioC
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC0383: Biotin synthesis protein bioC
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC0383: Biotin synthesis protein bioC
 
Stenotrophomonas maltophilia K279a

Gene: Smlt4463: Biotin synthesis protein bioC
Biotin synthesis protein bioC
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD