Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog BirA - Pseudomonadaceae

Properties
Regulator type: Transcription factor
Regulator family: BirA
Regulation mode: repressor
Biological process: Biotin biosynthesis
Effector: Biotin
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 15 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudomonas aeruginosa PAO1 5 1
Pseudomonas entomophila L48 6 2
Pseudomonas putida KT2440 6 2
Pseudomonas syringae pv. tomato str. DC3000 6 2
Pseudomonas fluorescens Pf-5 6 2
Pseudomonas mendocina ymp 6 2
Pseudomonas stutzeri A1501 6 2
Azotobacter vinelandii AvOP 5 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PA0490
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000
 
Pseudomonas fluorescens Pf-5
*
Pseudomonas mendocina ymp

Site:
position = -107
score = 8.23801
sequence = CTGTCAACC-(14)-GGTTGACGA

Gene: Pmen_4089: Permeases of the major facilitator superfamily
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
Permeases of the major facilitator superfamily
COG1040
 
Pseudomonas aeruginosa PAO1

Gene: PA0489: Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy
*
Pseudomonas entomophila L48

Site:
position = 5
score = 8.10836
sequence = CTGTCAACC-(15)-GGCTTACAA

Gene: PSEEN5122: Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy
*
Pseudomonas putida KT2440

Site:
position = 5
score = 8.5622
sequence = CTGTCAACT-(15)-GGTTTACAA

Gene: PP0361: Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = 5
score = 8.81229
sequence = CTGTCAACC-(15)-GGTTTACAT

Gene: PSPTO0493: Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy
*
Pseudomonas fluorescens Pf-5

Site:
position = 5
score = 8.81229
sequence = CTGTCAACC-(15)-GGTTTACAT

Gene: PFL_5694: Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy
 
Pseudomonas mendocina ymp

Gene: Pmen_4090: Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy
*
Pseudomonas stutzeri A1501

Site:
position = -21
score = 8.99046
sequence = CTGTCAACC-(14)-GGTTTACAA

Gene: PST_3867: Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy
*
Azotobacter vinelandii AvOP

Site:
position = -16
score = 8.99046
sequence = CTGTCAACC-(15)-GGTTTACAA

Gene: Avin_05970: Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy
Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy
 
CRON 2.
bioB
*
Pseudomonas aeruginosa PAO1

Site:
position = -129
score = 7.4675
sequence = ATGTAGTCC-(14)-GGTTGACAG

Gene: PA0500: Biotin synthase (EC 2.8.1.6)
*
Pseudomonas entomophila L48

Site:
position = -127
score = 8.10836
sequence = TTGTAAGCC-(15)-GGTTGACAG

Gene: PSEEN5121: Biotin synthase (EC 2.8.1.6)
*
Pseudomonas putida KT2440

Site:
position = -127
score = 8.5622
sequence = TTGTAAACC-(15)-AGTTGACAG

Gene: PP0362: Biotin synthase (EC 2.8.1.6)
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -128
score = 8.81229
sequence = ATGTAAACC-(15)-GGTTGACAG

Gene: PSPTO0494: Biotin synthase (EC 2.8.1.6)
*
Pseudomonas fluorescens Pf-5

Site:
position = -128
score = 8.81229
sequence = ATGTAAACC-(15)-GGTTGACAG

Gene: PFL_5693: Biotin synthase (EC 2.8.1.6)
*
Pseudomonas mendocina ymp

Site:
position = -119
score = 8.23801
sequence = TCGTCAACC-(14)-GGTTGACAG

Gene: Pmen_4088: Biotin synthase (EC 2.8.1.6)
*
Pseudomonas stutzeri A1501

Site:
position = -104
score = 8.99046
sequence = TTGTAAACC-(14)-GGTTGACAG

Gene: PST_3866: Biotin synthase (EC 2.8.1.6)
*
Azotobacter vinelandii AvOP

Site:
position = -139
score = 8.99046
sequence = TTGTAAACC-(15)-GGTTGACAG

Gene: Avin_05980: Biotin synthase (EC 2.8.1.6)
Biotin synthase (EC 2.8.1.6)
bioF
 
Pseudomonas aeruginosa PAO1

Gene: PA0501: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Pseudomonas entomophila L48

Gene: PSEEN5120: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Pseudomonas putida KT2440

Gene: PP0363: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO0495: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Pseudomonas fluorescens Pf-5

Gene: PFL_5692: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Pseudomonas mendocina ymp

Gene: Pmen_4087: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Pseudomonas stutzeri A1501

Gene: PST_3865: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Azotobacter vinelandii AvOP

Gene: Avin_05990: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
8-amino-7-oxononanoate synthase (EC 2.3.1.47)
bioH
 
Pseudomonas aeruginosa PAO1

Gene: PA0502: hypothetical protein
 
Pseudomonas entomophila L48

Gene: PSEEN5119: hypothetical protein
 
Pseudomonas putida KT2440

Gene: PP0364: hypothetical protein
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO0496: hypothetical protein
 
Pseudomonas fluorescens Pf-5

Gene: PFL_5691: hypothetical protein
 
Pseudomonas mendocina ymp

Gene: Pmen_4086: hypothetical protein
 
Pseudomonas stutzeri A1501

Gene: PST_3864: hypothetical protein
 
Azotobacter vinelandii AvOP

Gene: Avin_06000: hypothetical protein
hypothetical protein
bioC
 
Pseudomonas aeruginosa PAO1

Gene: PA0503: Biotin synthesis protein bioC
 
Pseudomonas entomophila L48

Gene: PSEEN5118: Biotin synthesis protein bioC
 
Pseudomonas putida KT2440

Gene: PP0365: Biotin synthesis protein bioC
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO0497: Biotin synthesis protein bioC
 
Pseudomonas fluorescens Pf-5

Gene: PFL_5690: Biotin synthesis protein bioC
 
Pseudomonas mendocina ymp

Gene: Pmen_4085: Biotin synthesis protein bioC
 
Pseudomonas stutzeri A1501

Gene: PST_3863: Biotin synthesis protein bioC
 
Azotobacter vinelandii AvOP

Gene: Avin_06010: Biotin synthesis protein bioC
Biotin synthesis protein bioC
bioD
 
Pseudomonas aeruginosa PAO1

Gene: PA0504: Dethiobiotin synthetase (EC 6.3.3.3)
 
Pseudomonas entomophila L48

Gene: PSEEN5117: Dethiobiotin synthetase (EC 6.3.3.3)
 
Pseudomonas putida KT2440

Gene: PP0366: Dethiobiotin synthetase (EC 6.3.3.3)
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO0498: Dethiobiotin synthetase (EC 6.3.3.3)
 
Pseudomonas fluorescens Pf-5

Gene: PFL_5689: Dethiobiotin synthetase (EC 6.3.3.3)
 
Pseudomonas mendocina ymp

Gene: Pmen_4084: Dethiobiotin synthetase (EC 6.3.3.3)
 
Pseudomonas stutzeri A1501

Gene: PST_3862: Dethiobiotin synthetase (EC 6.3.3.3)
 
Azotobacter vinelandii AvOP

Gene: Avin_45930: Dethiobiotin synthetase (EC 6.3.3.3)
Dethiobiotin synthetase (EC 6.3.3.3)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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