Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog BirA - Oceanospirillales/Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: BirA
Regulation mode: repressor
Biological process: Biotin biosynthesis
Effector: Biotin
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 26 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Hahella chejuensis KCTC 2396 6 2
Marinobacter aqueolei 5 2
Marinobacter sp. ELB17 7 3
Oceanobacter sp. RED65 5 1
Oceanospirillum sp. MED92
Marinomonas sp. MWYL1 7 2
Saccharophagus degradans 2-40 4 2
Teredinibacter turnerae T7901 5 2
Cellvibrio japonicus Ueda107 5 2
Chromohalobacter salexigens DSM 3043 6 1
Reinekea sp. MED297 6 2
Alcanivorax borkumensis SK2 6 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
bioB
*
Hahella chejuensis KCTC 2396

Site:
position = -164
score = 8.07255
sequence = CTGTTAACC-(14)-GGTTGACAG

Gene: HCH_05371: Biotin synthase (EC 2.8.1.6)
*
Marinobacter aqueolei

Site:
position = -41
score = 7.54231
sequence = CCGTAAACC-(14)-GGTTAACAG

Site:
position = -104
score = 8.07255
sequence = CTGTTAACC-(14)-GGTTGACAG

Gene: Maqu_2756: Biotin synthase (EC 2.8.1.6)
*
Marinobacter sp. ELB17

Site:
position = -40
score = 7.54231
sequence = CCGTAAACC-(14)-GGTTAACAG

Site:
position = -102
score = 8.07255
sequence = CTGTTAACC-(14)-GGTTGACAG

Gene: MELB17_06979: Biotin synthase (EC 2.8.1.6)
*
Oceanobacter sp. RED65

Site:
position = -152
score = 8.31812
sequence = CTGTAAACC-(14)-GGTTGACTG

Gene: RED65_04570: Biotin synthase (EC 2.8.1.6)
 
Oceanospirillum sp. MED92

Gene: MED92_16370: Biotin synthase (EC 2.8.1.6)
*
Marinomonas sp. MWYL1

Site:
position = -85
score = 8.37218
sequence = TTGTAAACC-(14)-TGTTGACAG

Gene: Mmwyl1_3457: Biotin synthase (EC 2.8.1.6)
*
Saccharophagus degradans 2-40

Site:
position = -90
score = 8.99046
sequence = TTGTAAACC-(15)-GGTTGACAG

Gene: Sde_3139: Biotin synthase (EC 2.8.1.6)
*
Teredinibacter turnerae T7901

Site:
position = -110
score = 8.70579
sequence = TTGTAAACT-(15)-GGTTGACAA

Gene: TERTU_0490: Biotin synthase (EC 2.8.1.6)
*
Cellvibrio japonicus Ueda107

Site:
position = -63
score = 8.46171
sequence = TAGTAAACC-(15)-GGTTGACAG

Gene: CJA_0426: Biotin synthase (EC 2.8.1.6)
*
Chromohalobacter salexigens DSM 3043

Site:
position = -46
score = 7.31199
sequence = TGGTCAACC-(14)-AGTTGACCA

Site:
position = -102
score = 8.84478
sequence = TTGTCAACC-(15)-GGTTGACAT

Gene: Csal_1167: Biotin synthase (EC 2.8.1.6)
*
Reinekea sp. MED297

Site:
position = -83
score = 6.77442
sequence = ATGTAAAGT-(15)-AATTGACAA

Gene: MED297_08751: Biotin synthase (EC 2.8.1.6)
*
Alcanivorax borkumensis SK2

Site:
position = -83
score = 7.88985
sequence = CAGTAAACT-(16)-GGTTGACAG

Gene: ABO_2220: Biotin synthase (EC 2.8.1.6)
Biotin synthase (EC 2.8.1.6)
bioF
 
Hahella chejuensis KCTC 2396

Gene: HCH_05370: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Marinobacter aqueolei

Gene: Maqu_2755: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Marinobacter sp. ELB17

Gene: MELB17_06984: 8-amino-7-oxononanoate synthase
 
Oceanobacter sp. RED65

Gene: RED65_04565: 8-amino-7-oxononanoate synthase
 
Oceanospirillum sp. MED92

Gene: MED92_16365: 8-amino-7-oxononanoate synthase
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_3456: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Saccharophagus degradans 2-40

Gene: Sde_3138: 8-amino-7-oxononanoate synthase
 
Teredinibacter turnerae T7901

Gene: TERTU_0491: 8-amino-7-oxononanoate synthase
 
Cellvibrio japonicus Ueda107

Gene: CJA_0427: 8-amino-7-oxononanoate synthase
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_1166: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Reinekea sp. MED297

Gene: MED297_08756: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Alcanivorax borkumensis SK2

Gene: ABO_2219: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
8-amino-7-oxononanoate synthase (EC 2.3.1.47)
bioH
 
Hahella chejuensis KCTC 2396

Gene: HCH_05369: Biotin synthesis protein BioH
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17

Gene: MELB17_06989: Biotin synthesis protein BioH
 
Oceanobacter sp. RED65

Gene: RED65_04560: Biotin synthesis protein BioH
 
Oceanospirillum sp. MED92

Gene: MED92_16360: Biotin synthesis protein BioH
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_3455: Biotin synthesis protein BioH
 
Saccharophagus degradans 2-40

Gene: Sde_3137: Biotin synthesis protein BioH / Biotin synthesis protein BioC
 
Teredinibacter turnerae T7901

Gene: TERTU_0492: Biotin synthesis protein BioH / Biotin synthesis protein BioC
 
Cellvibrio japonicus Ueda107

Gene: CJA_0428: Biotin synthesis protein BioH / Biotin synthesis protein BioC
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_1165: Biotin synthesis protein BioH
 
Reinekea sp. MED297

Gene: MED297_08761: Biotin synthesis protein BioH
 
Alcanivorax borkumensis SK2

Gene: ABO_2218: Biotin synthesis protein BioH
Biotin synthesis protein BioH
bioC
 
Hahella chejuensis KCTC 2396

Gene: HCH_05368: Biotin synthesis protein BioC
 
Marinobacter aqueolei

Gene: Maqu_2754: Biotin synthesis protein BioC
 
Marinobacter sp. ELB17

Gene: MELB17_06994: Biotin synthesis protein BioC
 
Oceanobacter sp. RED65

Gene: RED65_04555: Biotin synthesis protein BioC
 
Oceanospirillum sp. MED92

Gene: MED92_16355: Biotin synthesis protein BioC
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_3454: Biotin synthesis protein BioC
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_1164: Biotin synthesis protein BioC
 
Reinekea sp. MED297

Gene: MED297_08766: Biotin synthesis protein BioC
 
Alcanivorax borkumensis SK2

Gene: ABO_2217: Biotin synthesis protein BioC
Biotin synthesis protein BioC
bioD
 
Hahella chejuensis KCTC 2396

Gene: HCH_05366: Dethiobiotin synthetase (EC 6.3.3.3)
 
Marinobacter aqueolei

Gene: Maqu_2753: Dethiobiotin synthetase (EC 6.3.3.3)
 
Marinobacter sp. ELB17

Gene: MELB17_06999: Dethiobiotin synthetase (EC 6.3.3.3)
 
Oceanobacter sp. RED65

Gene: RED65_04550: Dethiobiotin synthetase (EC 6.3.3.3)
 
Oceanospirillum sp. MED92

Gene: MED92_16350: Dethiobiotin synthetase (EC 6.3.3.3)
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_3453: Dethiobiotin synthetase (EC 6.3.3.3)
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901

Gene: TERTU_0493: Dethiobiotin synthetase (EC 6.3.3.3)
 
Cellvibrio japonicus Ueda107

Gene: CJA_0429: Dethiobiotin synthetase (EC 6.3.3.3)
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_1163: Dethiobiotin synthetase (EC 6.3.3.3)
 
Reinekea sp. MED297

Gene: MED297_08771: Dethiobiotin synthetase (EC 6.3.3.3)
 
Alcanivorax borkumensis SK2

Gene: ABO_2216: Dethiobiotin synthetase (EC 6.3.3.3)
Dethiobiotin synthetase (EC 6.3.3.3)
bioA
 
Hahella chejuensis KCTC 2396

Gene: HCH_01529: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Marinobacter aqueolei

Gene: Maqu_3049: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Marinobacter sp. ELB17

Site:
position = -78
score = 6.98106
sequence = CTGTTAACT-(14)-GGTTAACAG

Gene: MELB17_04752: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Oceanobacter sp. RED65

Gene: RED65_10464: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Oceanospirillum sp. MED92

Gene: MED92_16420: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_3459: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Saccharophagus degradans 2-40

Gene: Sde_2227: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Teredinibacter turnerae T7901

Gene: TERTU_1207: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Cellvibrio japonicus Ueda107

Gene: CJA_2079: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_1162: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Reinekea sp. MED297

Gene: MED297_01550: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Alcanivorax borkumensis SK2

Gene: ABO_0256: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
COG1040
*
Hahella chejuensis KCTC 2396

Site:
position = 30
score = 8.07255
sequence = CTGTCAACC-(14)-GGTTAACAG

Gene: HCH_05372: Competence protein F homolog, phosphoribosyltransferase domain
*
Marinobacter aqueolei

Site:
position = 21
score = 8.07255
sequence = CTGTCAACC-(14)-GGTTAACAG

Site:
position = -42
score = 7.54231
sequence = CTGTTAACC-(14)-GGTTTACGG

Gene: Maqu_2757: Competence protein F homolog, phosphoribosyltransferase domain
*
Marinobacter sp. ELB17

Site:
position = 21
score = 8.07255
sequence = CTGTCAACC-(14)-GGTTAACAG

Site:
position = -41
score = 7.54231
sequence = CTGTTAACC-(14)-GGTTTACGG

Gene: MELB17_06974: Competence protein F homolog, phosphoribosyltransferase domain
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92

Gene: MED92_16375: Competence protein F homolog, phosphoribosyltransferase domain
*
Marinomonas sp. MWYL1

Site:
position = 15
score = 8.37218
sequence = CTGTCAACA-(14)-GGTTTACAA

Gene: Mmwyl1_3458: Competence protein F homolog, phosphoribosyltransferase domain
*
Saccharophagus degradans 2-40

Site:
position = -33
score = 8.99046
sequence = CTGTCAACC-(15)-GGTTTACAA

Gene: Sde_3140: Competence protein F homolog, phosphoribosyltransferase domain
*
Teredinibacter turnerae T7901

Site:
position = -49
score = 8.70579
sequence = TTGTCAACC-(15)-AGTTTACAA

Gene: TERTU_0489: Competence protein F homolog, phosphoribosyltransferase domain
*
Cellvibrio japonicus Ueda107

Site:
position = -147
score = 8.46171
sequence = CTGTCAACC-(15)-GGTTTACTA

Gene: CJA_0425: Competence protein F homolog, phosphoribosyltransferase domain
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_2296: Competence protein F homolog, phosphoribosyltransferase domain
*
Reinekea sp. MED297

Site:
position = -231
score = 6.77442
sequence = TTGTCAATT-(15)-ACTTTACAT

Gene: MED297_08746: Competence protein F homolog, phosphoribosyltransferase domain
*
Alcanivorax borkumensis SK2

Site:
position = 4
score = 7.88985
sequence = CTGTCAACC-(16)-AGTTTACTG

Gene: ABO_2221: Competence protein F homolog, phosphoribosyltransferase domain
Competence protein F homolog, phosphoribosyltransferase domain
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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