Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog BirA - Psychromonadaceae/Aeromonadales

Properties
Regulator type: Transcription factor
Regulator family: BirA
Regulation mode: repressor
Biological process: Biotin biosynthesis
Effector: Biotin
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 12 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Psychromonas ingrahamii 37 5 2
Psychromonas sp. CNPT3 5 2
Moritella sp. PE36 5 2
Aeromonas hydrophila subsp. hydrophila ATCC 7966 5 2
Aeromonas salmonicida subsp. salmonicida A449 5 2
Tolumonas auensis DSM 9187 5 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
bioA
*
Psychromonas ingrahamii 37

Site:
position = -52
score = 7.10328
sequence = CTGTCAACT-(14)-TCTTTACAT

Gene: Ping_1925: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Psychromonas sp. CNPT3

Site:
position = -43
score = 7.47147
sequence = CTGTCAACT-(14)-ACTTTACAA

Gene: PCNPT3_07370: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Moritella sp. PE36

Site:
position = -32
score = 8.31454
sequence = AGGTCAACC-(15)-GGTTTACAA

Gene: PE36_13022: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Site:
position = 145
score = 7.17034
sequence = cTGTcAACa-(16)-aaTTgACAA

Gene: AHA_1488: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Aeromonas salmonicida subsp. salmonicida A449

Site:
position = -45
score = 7.17034
sequence = CTGTCAACA-(16)-AATTGACAA

Gene: ASA_2878: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Tolumonas auensis DSM 9187

Site:
position = -44
score = 6.86908
sequence = CTGTCAATC-(15)-TATTTACAT

Gene: Tola_1096: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
CRON 2.
bioB
*
Psychromonas ingrahamii 37

Site:
position = -249
score = 7.10328
sequence = ATGTAAAGA-(14)-AGTTGACAG

Gene: Ping_1924: Biotin synthase (EC 2.8.1.6)
*
Psychromonas sp. CNPT3

Site:
position = -97
score = 7.47147
sequence = TTGTAAAGT-(14)-AGTTGACAG

Gene: PCNPT3_07375: Biotin synthase (EC 2.8.1.6)
*
Moritella sp. PE36

Site:
position = -92
score = 8.31454
sequence = TTGTAAACC-(15)-GGTTGACCT

Gene: PE36_13017: Biotin synthase (EC 2.8.1.6)
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Site:
position = -180
score = 7.17034
sequence = TTGTCAATT-(16)-TGTTGACAG

Gene: AHA_1489: Biotin synthase (EC 2.8.1.6)
*
Aeromonas salmonicida subsp. salmonicida A449

Site:
position = -181
score = 7.17034
sequence = TTGTCAATT-(16)-TGTTGACAG

Gene: ASA_2877: Biotin synthase (EC 2.8.1.6)
*
Tolumonas auensis DSM 9187

Site:
position = -90
score = 6.86908
sequence = ATGTAAATA-(15)-GATTGACAG

Gene: Tola_1097: Biotin synthase (EC 2.8.1.6)
Biotin synthase (EC 2.8.1.6)
bioF
 
Psychromonas ingrahamii 37

Gene: Ping_1923: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Psychromonas sp. CNPT3

Gene: PCNPT3_07380: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Moritella sp. PE36

Gene: PE36_13012: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Gene: AHA_1490: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Aeromonas salmonicida subsp. salmonicida A449

Gene: ASA_2876: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Tolumonas auensis DSM 9187

Gene: Tola_1098: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
8-amino-7-oxononanoate synthase (EC 2.3.1.47)
bioC
 
Psychromonas ingrahamii 37

Gene: Ping_1922: Biotin synthesis protein bioC
 
Psychromonas sp. CNPT3

Gene: PCNPT3_07385: Biotin synthesis protein bioC
 
Moritella sp. PE36

Gene: PE36_13007: Biotin synthesis protein bioC
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Gene: AHA_1491: Biotin synthesis protein bioC
 
Aeromonas salmonicida subsp. salmonicida A449

Gene: ASA_2875: Biotin synthesis protein bioC
 
Tolumonas auensis DSM 9187

Gene: Tola_1099: Biotin synthesis protein bioC
Biotin synthesis protein bioC
bioD
 
Psychromonas ingrahamii 37

Gene: Ping_1921: Dethiobiotin synthetase (EC 6.3.3.3)
 
Psychromonas sp. CNPT3

Gene: PCNPT3_07390: Dethiobiotin synthetase (EC 6.3.3.3)
 
Moritella sp. PE36

Gene: PE36_13002: Dethiobiotin synthetase (EC 6.3.3.3)
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Gene: AHA_1492: Dethiobiotin synthetase (EC 6.3.3.3)
 
Aeromonas salmonicida subsp. salmonicida A449

Gene: ASA_2874: Dethiobiotin synthetase (EC 6.3.3.3)
 
Tolumonas auensis DSM 9187

Gene: Tola_1100: Dethiobiotin synthetase (EC 6.3.3.3)
Dethiobiotin synthetase (EC 6.3.3.3)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD