Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog BirA - Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: BirA
Regulation mode: repressor
Biological process: Biotin biosynthesis
Effector: Biotin
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 17 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudoalteromonas atlantica T6c 5 2
Alteromonas macleodii 'Deep ecotype' 5 2
Glaciecola sp. HTCC2999 5 2
Colwellia psychrerythraea 34H 5 2
Alteromonadales bacterium TW-7 5 2
Pseudoalteromonas haloplanktis TAC125 1 1
Pseudoalteromonas tunicata D2 5 2
Idiomarina baltica OS145 5 2
Idiomarina loihiensis L2TR 5 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
bioA
*
Pseudoalteromonas atlantica T6c

Site:
position = -44
score = 7.61506
sequence = TTGTCAACT-(15)-ACTTTACAA

Gene: Patl_2558: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Alteromonas macleodii 'Deep ecotype'

Site:
position = -18
score = 6.89628
sequence = TTGTcAACt-(15)-ccTTTACcA

Gene: MADE_02212: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Glaciecola sp. HTCC2999

Site:
position = -44
score = 8.70579
sequence = TTGTCAACC-(15)-AGTTTACAA

Gene: GHTCC_010100004703: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Colwellia psychrerythraea 34H

Site:
position = -33
score = 7.67587
sequence = ATGTCAACG-(15)-GGTTAACAA

Gene: CPS_2593: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Alteromonadales bacterium TW-7

Site:
position = -34
score = 8.02193
sequence = TTGTCAACG-(16)-AGTTTACAT

Gene: ATW7_13078: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa1610: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Pseudoalteromonas tunicata D2

Site:
position = -34
score = 7.90934
sequence = TTGTCAACA-(16)-AGTTTACAT

Gene: PTD2_19562: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Idiomarina baltica OS145

Site:
position = -44
score = 6.809
sequence = CTGTCAATT-(15)-ACTTTACAA

Gene: OS145_05987: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Idiomarina loihiensis L2TR

Site:
position = -45
score = 6.61898
sequence = cTGTcAAta-(15)-acTTTACAA

Gene: IL1325: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
CRON 2.
bioB
*
Pseudoalteromonas atlantica T6c

Site:
position = -87
score = 7.61506
sequence = TTGTAAAGT-(15)-AGTTGACAA

Gene: Patl_2557: Biotin synthase (EC 2.8.1.6)
*
Alteromonas macleodii 'Deep ecotype'

Site:
position = -86
score = 6.89628
sequence = TgGTAAAgg-(15)-aGTTgACAA

Gene: MADE_02211: Biotin synthase (EC 2.8.1.6)
*
Glaciecola sp. HTCC2999

Site:
position = -92
score = 8.70579
sequence = TTGTAAACT-(15)-GGTTGACAA

Gene: GHTCC_010100004698: Biotin synthase (EC 2.8.1.6)
*
Colwellia psychrerythraea 34H

Site:
position = -87
score = 7.67587
sequence = TTGTTAACC-(15)-CGTTGACAT

Gene: CPS_2594: Biotin synthase (EC 2.8.1.6)
*
Alteromonadales bacterium TW-7

Site:
position = -95
score = 8.02193
sequence = ATGTAAACT-(16)-CGTTGACAA

Gene: ATW7_13073: Biotin synthase (EC 2.8.1.6)
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -99
score = 8.02193
sequence = ATGTAAACT-(16)-CGTTGACAA

Gene: PSHAa1609: Biotin synthase (EC 2.8.1.6)
*
Pseudoalteromonas tunicata D2

Site:
position = -95
score = 7.90934
sequence = ATGTAAACT-(16)-TGTTGACAA

Gene: PTD2_19567: Biotin synthase (EC 2.8.1.6)
*
Idiomarina baltica OS145

Site:
position = -95
score = 6.809
sequence = TTGTAAAGT-(15)-AATTGACAG

Gene: OS145_05992: Biotin synthase (EC 2.8.1.6)
*
Idiomarina loihiensis L2TR

Site:
position = -89
score = 6.61898
sequence = TTGTAAAgt-(15)-taTTgACAg

Gene: IL1324: Biotin synthase (EC 2.8.1.6)
Biotin synthase (EC 2.8.1.6)
bioF
 
Pseudoalteromonas atlantica T6c

Gene: Patl_2556: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_02210: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100004693: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Colwellia psychrerythraea 34H

Gene: CPS_2595: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Alteromonadales bacterium TW-7

Gene: ATW7_13068: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa1608: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_19572: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Idiomarina baltica OS145

Gene: OS145_05997: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Idiomarina loihiensis L2TR

Gene: IL1323: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
8-amino-7-oxononanoate synthase (EC 2.3.1.47)
bioC
 
Pseudoalteromonas atlantica T6c

Gene: Patl_2555: Biotin biosynthesis protein BioC
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_02209: Biotin biosynthesis protein BioC
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100004688: Biotin biosynthesis protein BioC
 
Colwellia psychrerythraea 34H

Gene: CPS_2596: Biotin biosynthesis protein BioC
 
Alteromonadales bacterium TW-7

Gene: ATW7_13063: Biotin biosynthesis protein BioC
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa1607: Biotin biosynthesis protein BioC
 
Pseudoalteromonas tunicata D2

Gene: PTD2_19577: Biotin biosynthesis protein BioC
 
Idiomarina baltica OS145

Gene: OS145_06002: Biotin biosynthesis protein BioC
 
Idiomarina loihiensis L2TR

Gene: IL1322: Biotin biosynthesis protein BioC
Biotin biosynthesis protein BioC
bioD
 
Pseudoalteromonas atlantica T6c

Gene: Patl_2554: Dethiobiotin synthetase (EC 6.3.3.3)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_02208: Dethiobiotin synthetase (EC 6.3.3.3)
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100004683: Dethiobiotin synthetase (EC 6.3.3.3)
 
Colwellia psychrerythraea 34H

Gene: CPS_2597: Dethiobiotin synthetase (EC 6.3.3.3)
 
Alteromonadales bacterium TW-7

Gene: ATW7_13058: Dethiobiotin synthetase (EC 6.3.3.3)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa1606: Dethiobiotin synthetase (EC 6.3.3.3)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_19582: Dethiobiotin synthetase (EC 6.3.3.3)
 
Idiomarina baltica OS145

Gene: OS145_06007: Dethiobiotin synthetase (EC 6.3.3.3)
 
Idiomarina loihiensis L2TR

Gene: IL1321: Dethiobiotin synthetase (EC 6.3.3.3)
Dethiobiotin synthetase (EC 6.3.3.3)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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