Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog BirA - Vibrionales

Properties
Regulator type: Transcription factor
Regulator family: BirA
Regulation mode: repressor
Biological process: Biotin biosynthesis
Effector: Biotin
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 20 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Vibrio cholerae O1 biovar eltor str. N16961 5 2
Vibrio vulnificus CMCP6 6 2
Vibrio harveyi ATCC BAA-1116 5 2
Vibrio parahaemolyticus RIMD 2210633 5 2
Vibrio shilonii AK1 5 2
Vibrio splendidus LGP32 5 2
Vibrio fischeri ES114 5 2
Vibrio salmonicida LFI1238 5 2
Vibrio angustum S14 5 2
Photobacterium profundum SS9 5 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
bioA
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -66
score = 8.19401
sequence = CTGTCAACA-(15)-GGTTTACAT

Gene: VC1111: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*2
Vibrio vulnificus CMCP6

Site:
position = -72
score = 7.76575
sequence = CTGTCAACA-(16)-AGTTTACAT

Gene: VV1_2944: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)

Gene: VV1_2945: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -73
score = 7.76575
sequence = CTGTCAACA-(16)-AGTTTACAT

Gene: VIBHAR_01806: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -73
score = 7.76575
sequence = CTGTCAACA-(16)-AGTTTACAT

Gene: VP1112: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Vibrio shilonii AK1

Site:
position = -62
score = 7.21904
sequence = CTGTCAACA-(15)-AGTTTACAC

Gene: VSAK1_00080: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Vibrio splendidus LGP32

Site:
position = -72
score = 7.76575
sequence = CTGTCAACA-(16)-AGTTTACAT

Gene: VS_2041: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Vibrio fischeri ES114

Site:
position = -44
score = 8.5622
sequence = CTGTCAACC-(15)-AGTTTACAA

Gene: VF_A0748: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Vibrio salmonicida LFI1238

Site:
position = -44
score = 8.5622
sequence = CTGTCAACC-(15)-AGTTTACAA

Gene: VSAL_II0861: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Vibrio angustum S14

Site:
position = -35
score = 8.38403
sequence = CTGTCAACT-(15)-GGTTTACAT

Gene: VAS14_01396: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Photobacterium profundum SS9

Site:
position = -36
score = 5.75975
sequence = cgaTAAAtC-(16)-GGTTgAaAg

Gene: PBPRA2330: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
CRON 2.
bioB
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -93
score = 8.19401
sequence = ATGTAAACC-(15)-TGTTGACAG

Gene: VC1112: Biotin synthase (EC 2.8.1.6)
*
Vibrio vulnificus CMCP6

Site:
position = -102
score = 7.76575
sequence = ATGTAAACT-(16)-TGTTGACAG

Gene: VV1_2943: Biotin synthase (EC 2.8.1.6)
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -73
score = 7.76575
sequence = ATGTAAACT-(16)-TGTTGACAG

Gene: VIBHAR_01807: Biotin synthase (EC 2.8.1.6)
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -90
score = 7.76575
sequence = ATGTAAACT-(16)-TGTTGACAG

Gene: VP1113: Biotin synthase (EC 2.8.1.6)
*
Vibrio shilonii AK1

Site:
position = -91
score = 7.21904
sequence = GTGTAAACT-(15)-TGTTGACAG

Gene: VSAK1_00085: Biotin synthase (EC 2.8.1.6)
*
Vibrio splendidus LGP32

Site:
position = -121
score = 7.76575
sequence = ATGTAAACT-(16)-TGTTGACAG

Gene: VS_2040: Biotin synthase (EC 2.8.1.6)
*
Vibrio fischeri ES114

Site:
position = -117
score = 8.5622
sequence = TTGTAAACT-(15)-GGTTGACAG

Gene: VF_A1189: Biotin synthase (EC 2.8.1.6)
*
Vibrio salmonicida LFI1238

Site:
position = -95
score = 8.5622
sequence = TTGTAAACT-(15)-GGTTGACAG

Gene: VSAL_II0860: Biotin synthase (EC 2.8.1.6)
*
Vibrio angustum S14

Site:
position = -213
score = 8.38403
sequence = ATGTAAACC-(15)-AGTTGACAG

Gene: VAS14_01401: Biotin synthase (EC 2.8.1.6)
*
Photobacterium profundum SS9

Site:
position = -149
score = 7.53154
sequence = aTGTAAACC-(15)-taTTgACAg

Gene: PBPRA2329: Biotin synthase (EC 2.8.1.6)
Biotin synthase (EC 2.8.1.6)
bioF
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VC1113: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Vibrio vulnificus CMCP6

Gene: VV1_2942: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_01808: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP1114: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Vibrio shilonii AK1

Gene: VSAK1_00090: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Vibrio splendidus LGP32

Gene: VS_2039: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Vibrio fischeri ES114

Gene: VF_A0747: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Vibrio salmonicida LFI1238

Gene: VSAL_II0859: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Vibrio angustum S14

Gene: VAS14_01406: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Photobacterium profundum SS9

Gene: PBPRA2328: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
8-amino-7-oxononanoate synthase (EC 2.3.1.47)
bioC
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VC1114: Biotin synthesis protein bioC
 
Vibrio vulnificus CMCP6

Gene: VV1_2941: Biotin synthesis protein bioC
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_01809: Biotin synthesis protein bioC
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP1115: Biotin synthesis protein bioC
 
Vibrio shilonii AK1

Gene: VSAK1_00095: Biotin synthesis protein bioC
 
Vibrio splendidus LGP32

Gene: VS_2038: Biotin synthesis protein bioC
 
Vibrio fischeri ES114

Gene: VF_A0746: Biotin synthesis protein bioC
 
Vibrio salmonicida LFI1238

Gene: VSAL_II0858: Biotin synthesis protein bioC
 
Vibrio angustum S14

Gene: VAS14_01411: Biotin synthesis protein bioC
 
Photobacterium profundum SS9

Gene: PBPRA2327: Biotin synthesis protein bioC
Biotin synthesis protein bioC
bioD
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VC1115: Dethiobiotin synthetase (EC 6.3.3.3)
 
Vibrio vulnificus CMCP6

Gene: VV1_2940: Dethiobiotin synthetase (EC 6.3.3.3)
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_01810: Dethiobiotin synthetase (EC 6.3.3.3)
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP1116: Dethiobiotin synthetase (EC 6.3.3.3)
 
Vibrio shilonii AK1

Gene: VSAK1_00100: Dethiobiotin synthetase (EC 6.3.3.3)
 
Vibrio splendidus LGP32

Gene: VS_2037: Dethiobiotin synthetase (EC 6.3.3.3)
 
Vibrio fischeri ES114

Gene: VF_A0745: Dethiobiotin synthetase (EC 6.3.3.3)
 
Vibrio salmonicida LFI1238

Gene: VSAL_II0857: Dethiobiotin synthetase (EC 6.3.3.3)
 
Vibrio angustum S14

Gene: VAS14_01416: Dethiobiotin synthetase (EC 6.3.3.3)
 
Photobacterium profundum SS9

Gene: PBPRA2326: Dethiobiotin synthetase (EC 6.3.3.3)
Dethiobiotin synthetase (EC 6.3.3.3)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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