Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog HexR - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: RpiR
Regulation mode: repressor (activator)
Biological process: Central carbohydrate metabolism
Effector: 2-keto-3-deoxy-6-phosphogluconate
Phylum: Proteobacteria/beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 28 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1 2 2
Acidovorax sp. JS42 3 2
Comamonas testosteroni KF-1 2 2
Delftia acidovorans SPH-1 4 4
Polaromonas naphthalenivorans CJ2 5 3
Polaromonas sp. JS666 6 4
Rhodoferax ferrireducens DSM 15236 7 4
Variovorax paradoxus S110
Verminephrobacter eiseniae EF01-2 3 3
Methylibium petroleiphilum PM1
Leptothrix cholodnii SP-6 6 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pykA
*
Acidovorax avenae subsp. citrulli AAC00-1

Site:
position = -47
score = 5.56091
sequence = TTGAAACCCGATTACAT

Gene: Aave_4581: Pyruvate kinase (EC 2.7.1.40)
*
Acidovorax sp. JS42

Site:
position = -38
score = 5.41716
sequence = TCGAAACTCGATTACAT

Gene: Ajs_3956: Pyruvate kinase (EC 2.7.1.40)
*
Comamonas testosteroni KF-1

Site:
position = -39
score = 5.56091
sequence = TTGAAACCCGATTACAT

Gene: CtesDRAFT_3719: Pyruvate kinase (EC 2.7.1.40)
*
Delftia acidovorans SPH-1

Site:
position = -38
score = 5.51609
sequence = TTGAAACCCGATTACAA

Gene: Daci_0930: Pyruvate kinase (EC 2.7.1.40)
*
Polaromonas naphthalenivorans CJ2

Site:
position = -30
score = 5.48223
sequence = CGGAAACTAAATTACAA

Gene: Pnap_3873: Pyruvate kinase (EC 2.7.1.40)
*
Polaromonas sp. JS666

Site:
position = -26
score = 5.00446
sequence = CGGGAACTAAATTACAG

Gene: Bpro_4634: Pyruvate kinase (EC 2.7.1.40)
*
Rhodoferax ferrireducens DSM 15236

Site:
position = -29
score = 5.29927
sequence = TGGAAACTTGATTACAA

Gene: Rfer_0205: Pyruvate kinase (EC 2.7.1.40)
 
Variovorax paradoxus S110

Gene: Vapar_5100: Pyruvate kinase (EC 2.7.1.40)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0196: Pyruvate kinase (EC 2.7.1.40)
 
Methylibium petroleiphilum PM1

Gene: Mpe_A0290: Pyruvate kinase (EC 2.7.1.40)
 
Leptothrix cholodnii SP-6

Gene: Lcho_0360: Pyruvate kinase (EC 2.7.1.40)
Pyruvate kinase (EC 2.7.1.40)
 
CRON 2.
edd
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_2793: Phosphogluconate dehydratase (EC 4.2.1.12)
 
Acidovorax sp. JS42

Gene: Ajs_2049: Phosphogluconate dehydratase (EC 4.2.1.12)
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_0557: Phosphogluconate dehydratase (EC 4.2.1.12)
 
Delftia acidovorans SPH-1

Gene: Daci_3765: Phosphogluconate dehydratase (EC 4.2.1.12)
*
Polaromonas naphthalenivorans CJ2

Site:
position = -54
score = 4.71759
sequence = CCGTAATAAAGTTACAT

Gene: Pnap_2986: Phosphogluconate dehydratase (EC 4.2.1.12)
*
Polaromonas sp. JS666

Site:
position = -34
score = 4.71759
sequence = CCGTAATAAAGTTACAT

Gene: Bpro_3551: Phosphogluconate dehydratase (EC 4.2.1.12)
*
Rhodoferax ferrireducens DSM 15236

Site:
position = -32
score = 4.91055
sequence = ATGTAATTAAGTTACCA

Gene: Rfer_2060: Phosphogluconate dehydratase (EC 4.2.1.12)
 
Variovorax paradoxus S110

Gene: Vapar_3708: Phosphogluconate dehydratase (EC 4.2.1.12)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_2570: Phosphogluconate dehydratase (EC 4.2.1.12)
 
Methylibium petroleiphilum PM1
*
Leptothrix cholodnii SP-6

Site:
position = -94
score = 4.35267
sequence = ATGTAACTTAGTTTCGG

Gene: Lcho_2919: Phosphogluconate dehydratase (EC 4.2.1.12)
Phosphogluconate dehydratase (EC 4.2.1.12)
eda
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_2792: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
 
Acidovorax sp. JS42

Gene: Ajs_2048: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_0556: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
 
Delftia acidovorans SPH-1

Gene: Daci_3766: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2985: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
 
Polaromonas sp. JS666

Gene: Bpro_3550: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_2061: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
 
Variovorax paradoxus S110

Gene: Vapar_3707: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_2569: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6

Gene: Lcho_2918: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
 
CRON 3.
tal
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_0943: Transaldolase (EC 2.2.1.2)
 
Acidovorax sp. JS42

Gene: Ajs_0696: Transaldolase (EC 2.2.1.2)
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4623: Transaldolase (EC 2.2.1.2)
 
Delftia acidovorans SPH-1

Gene: Daci_5675: Transaldolase (EC 2.2.1.2)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_0654: Transaldolase (EC 2.2.1.2)
*2
Polaromonas sp. JS666

Site:
position = -95
score = 4.14114
sequence = TTGTAATTTAGTTTCAC

Gene: Bpro_0752: Transaldolase (EC 2.2.1.2)

Gene: Bpro_4350: Transaldolase (EC 2.2.1.2)
*
Rhodoferax ferrireducens DSM 15236

Site:
position = -108
score = 4.91128
sequence = ATGTAACTTAGTTTCAT

Gene: Rfer_1126: Transaldolase (EC 2.2.1.2)
 
Variovorax paradoxus S110

Gene: Vapar_1102: Transaldolase (EC 2.2.1.2)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1779: Transaldolase (EC 2.2.1.2)
 
Methylibium petroleiphilum PM1

Gene: Mpe_A3095: Transaldolase (EC 2.2.1.2)
*
Leptothrix cholodnii SP-6

Site:
position = -221
score = 4.63706
sequence = CTGTAACTGAGTTTCAG

Gene: Lcho_3386: Transaldolase (EC 2.2.1.2)
Transaldolase (EC 2.2.1.2)
pgi
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_0944: Glucose-6-phosphate isomerase (EC 5.3.1.9)
 
Acidovorax sp. JS42

Gene: Ajs_0697: Glucose-6-phosphate isomerase (EC 5.3.1.9)
 3
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4622: Glucose-6-phosphate isomerase (EC 5.3.1.9)

Gene: CtesDRAFT_1226: Glucose-6-phosphate isomerase (EC 5.3.1.9)

Gene: CtesDRAFT_2676: Glucose-6-phosphate isomerase (EC 5.3.1.9)
*2
Delftia acidovorans SPH-1

Gene: Daci_5674: Glucose-6-phosphate isomerase (EC 5.3.1.9)

Site:
position = -24
score = 4.30025
sequence = TGGTAATCAGATTACTT

Site:
position = -109
score = 4.79061
sequence = TGGTAACTTGGTTACCA

Gene: Daci_5598: Glucose-6-phosphate isomerase (EC 5.3.1.9)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_0655: Glucose-6-phosphate isomerase (EC 5.3.1.9)
 
Polaromonas sp. JS666

Gene: Bpro_0753: Glucose-6-phosphate isomerase (EC 5.3.1.9)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_1127: Glucose-6-phosphate isomerase (EC 5.3.1.9)
 
Variovorax paradoxus S110

Gene: Vapar_1103: Glucose-6-phosphate isomerase (EC 5.3.1.9)
*
Verminephrobacter eiseniae EF01-2

Site:
position = -67
score = 4.51857
sequence = TCGTAATCAAGTTACCA

Gene: Veis_4222: Glucose-6-phosphate isomerase (EC 5.3.1.9)
 
Methylibium petroleiphilum PM1

Gene: Mpe_A3094: Glucose-6-phosphate isomerase (EC 5.3.1.9)
 
Leptothrix cholodnii SP-6

Gene: Lcho_3385: Glucose-6-phosphate isomerase (EC 5.3.1.9)
Glucose-6-phosphate isomerase (EC 5.3.1.9)
 
CRON 4.
zwf
*
Acidovorax avenae subsp. citrulli AAC00-1

Site:
position = -105
score = 5.07009
sequence = GTGAAACTCGGTAACAT

Gene: Aave_0942: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
*
Acidovorax sp. JS42

Site:
position = -93
score = 5.29906
sequence = ATGAAACTCGATAACAT

Gene: Ajs_0695: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
 
Comamonas testosteroni KF-1
*
Delftia acidovorans SPH-1

Site:
position = -47
score = 4.82245
sequence = TGGTAACCAAGTTACCA

Gene: Daci_5599: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
*
Polaromonas naphthalenivorans CJ2

Site:
position = 13
score = 4.92284
sequence = ATGAAACTTTATTACCT

Gene: Pnap_0653: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
*
Polaromonas sp. JS666

Site:
position = -74
score = 5.49989
sequence = GTGAAACTAAATTACAA

Gene: Bpro_0751: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
*
Rhodoferax ferrireducens DSM 15236

Site:
position = -123
score = 5.66911
sequence = ATGAAACTAAGTTACAT

Gene: Rfer_1125: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
 
Variovorax paradoxus S110

Gene: Vapar_1096: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
*
Verminephrobacter eiseniae EF01-2

Site:
position = -44
score = 4.97714
sequence = ATGTAACGTGATTACAA

Gene: Veis_4223: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
 
Methylibium petroleiphilum PM1
*
Leptothrix cholodnii SP-6

Site:
position = -47
score = 5.5929
sequence = CTGAAACTCAGTTACAG

Gene: Lcho_3387: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
hexR
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_0941: Central carbohydrate metabolism transcription regulator HexR, RpiR family
 
Acidovorax sp. JS42

Gene: Ajs_0694: Central carbohydrate metabolism transcription regulator HexR, RpiR family
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4624: Central carbohydrate metabolism transcription regulator HexR, RpiR family
 
Delftia acidovorans SPH-1

Gene: Daci_5676: Central carbohydrate metabolism transcription regulator HexR, RpiR family
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_0652: Central carbohydrate metabolism transcription regulator HexR, RpiR family
 
Polaromonas sp. JS666

Gene: Bpro_0750: Central carbohydrate metabolism transcription regulator HexR, RpiR family
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_1124: Central carbohydrate metabolism transcription regulator HexR, RpiR family
 
Variovorax paradoxus S110
*
Verminephrobacter eiseniae EF01-2

Site:
position = -44
score = 4.61831
sequence = TGCAAACCCGGTTACAT

Gene: Veis_1778: Central carbohydrate metabolism transcription regulator HexR, RpiR family
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6

Gene: Lcho_3388: Central carbohydrate metabolism transcription regulator HexR, RpiR family
Central carbohydrate metabolism transcription regulator HexR, RpiR family
 
CRON 5.
pgk
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4693: Phosphoglycerate kinase (EC 2.7.2.3)
 
Acidovorax sp. JS42

Gene: Ajs_4056: Phosphoglycerate kinase (EC 2.7.2.3)
*
Comamonas testosteroni KF-1

Site:
position = -157
score = 5.21141
sequence = CTGAAATCCAGTTACAG

Gene: CtesDRAFT_3819: Phosphoglycerate kinase (EC 2.7.2.3)
*
Delftia acidovorans SPH-1

Site:
position = -27
score = 5.1671
sequence = CTGAAACCGGATTACAG

Gene: Daci_0828: Phosphoglycerate kinase (EC 2.7.2.3)
 2
Polaromonas naphthalenivorans CJ2

Gene: Pnap_1987: Phosphoglycerate kinase (EC 2.7.2.3)

Gene: Pnap_3874: Phosphoglycerate kinase (EC 2.7.2.3)
 
Polaromonas sp. JS666

Gene: Bpro_4635: Phosphoglycerate kinase (EC 2.7.2.3)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3690: Phosphoglycerate kinase (EC 2.7.2.3)
 2
Variovorax paradoxus S110

Gene: Vapar_5101: Phosphoglycerate kinase (EC 2.7.2.3)

Gene: Vapar_3023: Phosphoglycerate kinase (EC 2.7.2.3)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_4078: Phosphoglycerate kinase (EC 2.7.2.3)
 2
Methylibium petroleiphilum PM1

Gene: Mpe_A0289: Phosphoglycerate kinase (EC 2.7.2.3)

Gene: Mpe_A2792: Phosphoglycerate kinase (EC 2.7.2.3)
 
Leptothrix cholodnii SP-6

Gene: Lcho_0355: Phosphoglycerate kinase (EC 2.7.2.3)
Phosphoglycerate kinase (EC 2.7.2.3)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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