Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NsrR - Sphingomonadales

Properties
Regulator type: Transcription factor
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Nitrosative stress response
Effector: Nitric oxide
Phylum: Proteobacteria/alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 5 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Erythrobacter litoralis HTCC2594
Erythrobacter sp. NAP1
Novosphingobium aromaticivorans DSM 12444 2 2
Sphingopyxis alaskensis RB2256 2 2
Sphingobium japonicum UT26S
Sphingomonas wittichii RW1
Zymomonas mobilis subsp. mobilis ZM4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF01152
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_1574: Truncated hemoglobin
*
Sphingopyxis alaskensis RB2256

Site:
position = -77
score = 4.14976
sequence = TAAGTATATTATATATTGC

Site:
position = -34
score = 5.8004
sequence = GAGGTATCTTATATACCAT

Gene: Sala_0535: Truncated hemoglobin
 
Sphingobium japonicum UT26S
 2
Sphingomonas wittichii RW1

Gene: Swit_5297: Truncated hemoglobin

Gene: Swit_3175: Truncated hemoglobin
 
Zymomonas mobilis subsp. mobilis ZM4
Truncated hemoglobin
 
CRON 2.
nsrR
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1
*
Novosphingobium aromaticivorans DSM 12444

Site:
position = 3
score = 5.65423
sequence = CTGGTATTTAATCTACTTG

Gene: Saro_0149: Nitrite-sensitive transcriptional repressor NsrR
*
Sphingopyxis alaskensis RB2256

Site:
position = -66
score = 5.8004
sequence = ATGGTATATAAGATACCTC

Gene: Sala_0536: Nitrite-sensitive transcriptional repressor NsrR
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
Nitrite-sensitive transcriptional repressor NsrR
 
CRON 3.
hmp
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1
*
Novosphingobium aromaticivorans DSM 12444

Site:
position = -48
score = 5.65423
sequence = CAAGTAGATTAAATACCAG

Gene: Saro_0148: Flavohemoprotein, nitric oxide dioxygenase
 
Sphingopyxis alaskensis RB2256
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1

Gene: Swit_5299: Flavohemoprotein, nitric oxide dioxygenase
 
Zymomonas mobilis subsp. mobilis ZM4
Flavohemoprotein, nitric oxide dioxygenase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD