Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NsrR - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Nitrosative stress response
Effector: Nitric oxide
Phylum: Proteobacteria/beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 15 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1 3 2
Acidovorax sp. JS42 3 3
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1
Polaromonas naphthalenivorans CJ2 7 5
Polaromonas sp. JS666 1 1
Rhodoferax ferrireducens DSM 15236 3 3
Variovorax paradoxus S110
Verminephrobacter eiseniae EF01-2
Methylibium petroleiphilum PM1
Leptothrix cholodnii SP-6
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF10006
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
*2
Polaromonas naphthalenivorans CJ2

Site:
position = -62
score = 5.30265
sequence = GGTGTATTATAAATGCATC

Site:
position = -51
score = 4.52321
sequence = AATGCATCTTTTAAGCACC

Gene: Pnap_3969: hypothetical protein

Gene: Pnap_1329: hypothetical protein
*2
Polaromonas sp. JS666

Gene: Bpro_4723: hypothetical protein

Site:
position = -58
score = 4.81276
sequence = GGTGCATCTCAAATACACC

Gene: Bpro_4720: hypothetical protein
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
hypothetical protein
nnrS
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_2159: NnrS protein involved in response to NO
*
Acidovorax sp. JS42

Site:
position = -49
score = 4.15393
sequence = TATTCATGTAAAATGAATC

Gene: Ajs_2847: NnrS protein involved in response to NO
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_3970: NnrS protein involved in response to NO
 
Polaromonas sp. JS666

Gene: Bpro_4727: NnrS protein involved in response to NO
*
Rhodoferax ferrireducens DSM 15236

Site:
position = -54
score = 5.41559
sequence = GATGCATATAAAATGTACT

Gene: Rfer_1884: NnrS protein involved in response to NO
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6

Gene: Lcho_1475: NnrS protein involved in response to NO
NnrS protein involved in response to NO
norB
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
*
Polaromonas naphthalenivorans CJ2

Site:
position = -104
score = 4.7139
sequence = AATGTATTTTATTGGCATG

Gene: Pnap_1328: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_1886: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent
nsrR
*
Acidovorax avenae subsp. citrulli AAC00-1

Site:
position = -66
score = 5.23884
sequence = GATGAATATTTTATGCAAT

Gene: Aave_1572: Nitrite-sensitive transcriptional repressor NsrR
*
Acidovorax sp. JS42

Site:
position = -64
score = 5.39009
sequence = GATGAATATTTTATTCATT

Gene: Ajs_3163: Nitrite-sensitive transcriptional repressor NsrR
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
*
Polaromonas naphthalenivorans CJ2

Site:
position = -128
score = 4.7139
sequence = CATGCCAATAAAATACATT

Gene: Pnap_1327: Nitrite-sensitive transcriptional repressor NsrR
 
Polaromonas sp. JS666

Gene: Bpro_4724: Nitrite-sensitive transcriptional repressor NsrR
*
Rhodoferax ferrireducens DSM 15236

Site:
position = -70
score = 5.41559
sequence = AGTACATTTTATATGCATC

Gene: Rfer_1883: Nitrite-sensitive transcriptional repressor NsrR
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
Nitrite-sensitive transcriptional repressor NsrR
 
CRON 2.
dnrN
*
Acidovorax avenae subsp. citrulli AAC00-1

Site:
position = -44
score = 5.23884
sequence = ATTGCATAAAATATTCATC

Gene: Aave_1571: Nitric oxide-dependent regulator DnrN or NorA
*
Acidovorax sp. JS42

Site:
position = -44
score = 5.39009
sequence = AATGAATAAAATATTCATC

Gene: Ajs_3164: Nitric oxide-dependent regulator DnrN or NorA
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
Nitric oxide-dependent regulator DnrN or NorA
PF01152
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_1570: Truncated hemoglobin
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
*
Polaromonas naphthalenivorans CJ2

Site:
position = -78
score = 5.28336
sequence = GATTCATTTAAAATACATC

Gene: Pnap_1025: Truncated hemoglobin
 
Polaromonas sp. JS666
*
Rhodoferax ferrireducens DSM 15236

Site:
position = -76
score = 4.93925
sequence = GATGCATCTTATATCTATT

Gene: Rfer_4128: Truncated hemoglobin
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
Truncated hemoglobin
 
CRON 3.
nirK
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
*
Polaromonas naphthalenivorans CJ2

Site:
position = -155
score = 4.98319
sequence = CATGCATTTAATATGTACA

Gene: Pnap_1326: nitrite reductase, copper-containing
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
nitrite reductase, copper-containing
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD