Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NsrR - Ralstonia

Properties
Regulator type: Transcription factor
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Nitrosative stress response
Effector: Nitric oxide
Phylum: Proteobacteria/beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 23 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Ralstonia eutropha H16 2 2
Cupriavidus taiwanensis 2 2
Ralstonia metallidurans CH34 4 4
Ralstonia eutropha JMP134 2 2
Ralstonia solanacearum GMI1000 8 4
Ralstonia pickettii 12J 9 5
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PHG233
 
Ralstonia eutropha H16

Gene: PHG233: Hemerythrin HHE cation binding domain protein
 
Cupriavidus taiwanensis
 
Ralstonia metallidurans CH34
 
Ralstonia eutropha JMP134
 
Ralstonia solanacearum GMI1000
*
Ralstonia pickettii 12J

Site:
position = -102
score = 5.54626
sequence = GATGTATTGTCAATGCATG

Gene: Rpic_2508: Hemerythrin HHE cation binding domain protein
Hemerythrin HHE cation binding domain protein
 
CRON 2.
hmp
*
Ralstonia eutropha H16

Site:
position = -41
score = 5.63472
sequence = CATGCATTTAATTTGCATG

Gene: H16_A3533: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)
*
Cupriavidus taiwanensis

Site:
position = -40
score = 4.62545
sequence = CATGCATATTTTCTGCATG

Gene: RALTA_A2986: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)
*
Ralstonia metallidurans CH34

Site:
position = 32
score = 6.04074
sequence = CATGCATTTTACATGCATG

Gene: Rmet_3382: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)
*
Ralstonia eutropha JMP134

Site:
position = -41
score = 5.47753
sequence = CATGCATTTTGTTTGCATG

Gene: Reut_A3219: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)
*
Ralstonia solanacearum GMI1000

Site:
position = -133
score = 4.32149
sequence = GTGGTATTTAATATGCATG

Gene: RS01706: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)
*
Ralstonia pickettii 12J

Site:
position = -32
score = 3.60448
sequence = GTTGCATATTTCACGCATA

Gene: Rpic_3609: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)
Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)
nnrS
 
Ralstonia eutropha H16
 
Cupriavidus taiwanensis
*
Ralstonia metallidurans CH34

Site:
position = -62
score = 5.5971
sequence = ATTGCATTTAAGATGCATG

Gene: Rmet_5307: NnrS protein involved in response to NO
 
Ralstonia eutropha JMP134
 
Ralstonia solanacearum GMI1000

Gene: RS01707: NnrS protein involved in response to NO
 
Ralstonia pickettii 12J

Gene: Rpic_3610: NnrS protein involved in response to NO
NnrS protein involved in response to NO
 
CRON 3.
nsrR
*
Ralstonia eutropha H16

Site:
position = -39
score = 5.2989
sequence = CTTGCATCCTGGATGCATC

Gene: H16_A3534: Nitrite-sensitive transcriptional repressor NsrR
*
Cupriavidus taiwanensis

Site:
position = -40
score = 5.45609
sequence = CTTGCATCCTAGATGCATC

Gene: RALTA_A2987: Nitrite-sensitive transcriptional repressor NsrR
*
Ralstonia metallidurans CH34

Site:
position = -25
score = 5.45773
sequence = CTTGCATTGGCGATGCACG

Gene: Rmet_3383: Nitrite-sensitive transcriptional repressor NsrR
*
Ralstonia eutropha JMP134

Site:
position = -39
score = 4.5798
sequence = CTTGCATTTGAAATGCCGC

Gene: Reut_A3220: Nitrite-sensitive transcriptional repressor NsrR
*
Ralstonia solanacearum GMI1000

Site:
position = -134
score = 4.32149
sequence = CATGCATATTAAATACCAC

Gene: RS01705: Nitrite-sensitive transcriptional repressor NsrR
*
Ralstonia pickettii 12J

Site:
position = -218
score = 3.60448
sequence = TATGCGTGAAATATGCAAC

Gene: Rpic_3608: Nitrite-sensitive transcriptional repressor NsrR
Nitrite-sensitive transcriptional repressor NsrR
 
CRON 4.
PF10006
 
Ralstonia eutropha H16
 
Cupriavidus taiwanensis
*
Ralstonia metallidurans CH34

Site:
position = -53
score = 5.60085
sequence = GATGCAATTTAAATGCATC

Gene: Rmet_4922: hypothetical protein, PF10006
 
Ralstonia eutropha JMP134
*
Ralstonia solanacearum GMI1000

Site:
position = -103
score = 3.68083
sequence = CAAGTATCTGATATACATC

Site:
position = -53
score = 5.84968
sequence = GATGCATTCTCAATGCATC

Gene: RS03037: hypothetical protein, PF10006
*
Ralstonia pickettii 12J

Site:
position = -101
score = 4.31863
sequence = CAAGCATCTGATATACATC

Site:
position = -51
score = 4.95742
sequence = GTTGCATCCTTAATGCATC

Gene: Rpic_4014: hypothetical protein, PF10006
hypothetical protein, PF10006
norB
 
Ralstonia eutropha H16

Gene: PHG244: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent
 
Cupriavidus taiwanensis
 
Ralstonia metallidurans CH34

Gene: Rmet_3167: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent
 
Ralstonia eutropha JMP134
 
Ralstonia solanacearum GMI1000

Gene: RSp1505: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent
 
Ralstonia pickettii 12J

Gene: Rpic_4013: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent
Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent
 
CRON 5.
nirK
 
Ralstonia eutropha H16
 
Cupriavidus taiwanensis
 
Ralstonia metallidurans CH34
 
Ralstonia eutropha JMP134
*
Ralstonia solanacearum GMI1000

Site:
position = -203
score = 5.84968
sequence = GATGCATTGAGAATGCATC

Site:
position = -153
score = 3.68083
sequence = GATGTATATCAGATACTTG

Gene: RS03038: Copper-containing nitrite reductase (EC 1.7.2.1)
*
Ralstonia pickettii 12J

Site:
position = -241
score = 4.95742
sequence = GATGCATTAAGGATGCAAC

Site:
position = -191
score = 4.31863
sequence = GATGTATATCAGATGCTTG

Gene: Rpic_4015: Copper-containing nitrite reductase (EC 1.7.2.1)
Copper-containing nitrite reductase (EC 1.7.2.1)
PF03781
 
Ralstonia eutropha H16
 
Cupriavidus taiwanensis
 
Ralstonia metallidurans CH34
 
Ralstonia eutropha JMP134
 
Ralstonia solanacearum GMI1000

Gene: RS03039: Probable signal peptide protein, PF03781
 
Ralstonia pickettii 12J

Gene: Rpic_4016: Probable signal peptide protein, PF03781
Probable signal peptide protein, PF03781
PF02630
 
Ralstonia eutropha H16
 
Cupriavidus taiwanensis
 
Ralstonia metallidurans CH34
 
Ralstonia eutropha JMP134
 
Ralstonia solanacearum GMI1000

Gene: RS03040: electron transport protein SCO1/SenC
 
Ralstonia pickettii 12J

Gene: Rpic_4017: electron transport protein SCO1/SenC
electron transport protein SCO1/SenC
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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