Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog FabR - Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Fatty acid biosynthesis
Effector: Unsaturated acyl-ACP; Unsaturated acyl-CoA
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 45 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudoalteromonas atlantica T6c 4 4
Alteromonas macleodii 'Deep ecotype' 6 4
Glaciecola sp. HTCC2999 5 4
Colwellia psychrerythraea 34H 2 2
Alteromonadales bacterium TW-7 10 8
Pseudoalteromonas haloplanktis TAC125 9 7
Pseudoalteromonas tunicata D2 7 5
Idiomarina baltica OS145 3 3
Idiomarina loihiensis L2TR 4 4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
fadE
 
Pseudoalteromonas atlantica T6c

Gene: Patl_1688: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_02616: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100000785: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Colwellia psychrerythraea 34H
*
Alteromonadales bacterium TW-7

Site:
position = -155
score = 6.10392
sequence = AGCGTACAGGTGTAAGCC

Gene: ATW7_02937: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAb0374: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_02811: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
CRON 2.
psrA
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_01897: Predicted transcriptional regulator for fatty acid degradation PsrA, TetR family
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_1586: Predicted transcriptional regulator for fatty acid degradation PsrA, TetR family
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
*
Idiomarina baltica OS145

Site:
position = -69
score = 5.4473
sequence = AGCGAACACTTGATCGCT

Gene: OS145_12684: Predicted transcriptional regulator for fatty acid degradation PsrA, TetR family
*
Idiomarina loihiensis L2TR

Site:
position = -72
score = 5.63873
sequence = AGCGAACACTTGCACGCT

Gene: IL0918: Predicted transcriptional regulator for fatty acid degradation PsrA, TetR family
Predicted transcriptional regulator for fatty acid degradation PsrA, TetR family
 
CRON 3.
fabB
 
Pseudoalteromonas atlantica T6c

Gene: Patl_3383: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_01194: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100007637: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)
*
Colwellia psychrerythraea 34H

Site:
position = -111
score = 5.83017
sequence = AGTGTACAAGTGTACGCT

Gene: CPS_3807: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)
*
Alteromonadales bacterium TW-7

Site:
position = -93
score = 5.83017
sequence = AGAGTACAAGTGTACGCT

Gene: ATW7_05551: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -93
score = 5.83017
sequence = AGAGTACAAGTGTACGCT

Gene: PSHAa2080: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_15422: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)
 
Idiomarina baltica OS145

Gene: OS145_12101: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)
 
Idiomarina loihiensis L2TR

Gene: IL1021: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)
 
CRON 4.
hyIII
*
Pseudoalteromonas atlantica T6c

Site:
position = -62
score = 5.63873
sequence = AGTGTACAAGTGTTCGCT

Gene: Patl_3595: COG1272: Predicted membrane protein hemolysin III homolog
*
Alteromonas macleodii 'Deep ecotype'

Site:
position = -126
score = 5.67723
sequence = AGCGAACAAGTGTGCGCT

Gene: MADE_03143: COG1272: Predicted membrane protein hemolysin III homolog
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_0720: COG1272: Predicted membrane protein hemolysin III homolog
*
Alteromonadales bacterium TW-7

Site:
position = -48
score = 5.83017
sequence = AGCGTACACTTGTACACT

Gene: ATW7_00075: COG1272: Predicted membrane protein hemolysin III homolog
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -47
score = 5.20586
sequence = AGCGTACACACGTACACT

Gene: PSHAb0446: COG1272: Predicted membrane protein hemolysin III homolog
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145

Gene: OS145_08998: COG1272: Predicted membrane protein hemolysin III homolog
 
Idiomarina loihiensis L2TR

Gene: IL2439: COG1272: Predicted membrane protein hemolysin III homolog
COG1272: Predicted membrane protein hemolysin III homolog
 
CRON 5.
OLE1
*
Pseudoalteromonas atlantica T6c

Site:
position = -40
score = 6.3191
sequence = AGCGTACAAGTGTAAGCT

Gene: Patl_4032: Fatty acid desaturase (EC 1.14.19.1)
*
Alteromonas macleodii 'Deep ecotype'

Site:
position = -30
score = 5.67533
sequence = AGCGAACAGATGTAAGCC

Gene: MADE_03581: Fatty acid desaturase (EC 1.14.19.1)
*
Glaciecola sp. HTCC2999

Site:
position = -57
score = 6.3191
sequence = AGCTTACACTTGTACGCT

Gene: GHTCC_010100010798: Fatty acid desaturase (EC 1.14.19.1)
 
Colwellia psychrerythraea 34H
*
Alteromonadales bacterium TW-7

Site:
position = -31
score = 6.23286
sequence = AGCTTACAGTTGTACGCT

Gene: ATW7_16877: Fatty acid desaturase (EC 1.14.19.1)
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -31
score = 6.23286
sequence = AGCTTACAGTTGTACGCT

Gene: PSHAa2897: Fatty acid desaturase (EC 1.14.19.1)
*
Pseudoalteromonas tunicata D2

Site:
position = -30
score = 6.33114
sequence = AGCGTACAGTTGTACGCT

Gene: PTD2_09622: Fatty acid desaturase (EC 1.14.19.1)
*
Idiomarina baltica OS145

Site:
position = -80
score = 6.12767
sequence = AGCGTACAAGTGTTAGCT

Gene: OS145_02090: Fatty acid desaturase (EC 1.14.19.1)
*
Idiomarina loihiensis L2TR

Site:
position = -59
score = 6.5312
sequence = AGCGTACAGGTGTACGCT

Gene: IL0278: Fatty acid desaturase (EC 1.14.19.1)
Fatty acid desaturase (EC 1.14.19.1)
 
CRON 6.
fabR
*
Pseudoalteromonas atlantica T6c

Site:
position = -137
score = 6.3191
sequence = AGCTTACACTTGTACGCT

Gene: Patl_4031: Unsaturated fatty acid biosythesis repressor FabR, TetR family
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_03580: Unsaturated fatty acid biosythesis repressor FabR, TetR family
*
Glaciecola sp. HTCC2999

Site:
position = -62
score = 6.3191
sequence = AGCGTACAAGTGTAAGCT

Gene: GHTCC_010100010803: Unsaturated fatty acid biosythesis repressor FabR, TetR family
 
Colwellia psychrerythraea 34H

Gene: CPS_0335: Unsaturated fatty acid biosythesis repressor FabR, TetR family
*
Alteromonadales bacterium TW-7

Site:
position = -113
score = 6.23286
sequence = AGCGTACAACTGTAAGCT

Gene: ATW7_16882: Unsaturated fatty acid biosythesis repressor FabR, TetR family
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -113
score = 6.23286
sequence = AGCGTACAACTGTAAGCT

Gene: PSHAa2896: Unsaturated fatty acid biosythesis repressor FabR, TetR family
*
Pseudoalteromonas tunicata D2

Site:
position = -129
score = 6.33114
sequence = AGCGTACAACTGTACGCT

Gene: PTD2_09617: Unsaturated fatty acid biosythesis repressor FabR, TetR family
*
Idiomarina baltica OS145

Site:
position = -104
score = 6.12767
sequence = AGCTAACACTTGTACGCT

Gene: OS145_02095: Unsaturated fatty acid biosythesis repressor FabR, TetR family
*
Idiomarina loihiensis L2TR

Site:
position = -112
score = 6.5312
sequence = AGCGTACACCTGTACGCT

Gene: IL0277: Unsaturated fatty acid biosythesis repressor FabR, TetR family
Unsaturated fatty acid biosythesis repressor FabR, TetR family
 
CRON 7.
fabA
*
Pseudoalteromonas atlantica T6c

Site:
position = -54
score = 6.13971
sequence = AGCGTACAACTGTTCGCT

Gene: Patl_2009: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
 
Alteromonas macleodii 'Deep ecotype'
*
Glaciecola sp. HTCC2999

Site:
position = -53
score = 6.22595
sequence = AGCGTACAAGTGTTCGCT

Gene: GHTCC_010100006274: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Colwellia psychrerythraea 34H

Site:
position = -65
score = 5.24296
sequence = AGTGTACAAGCGTACGCT

Gene: CPS_3274: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Alteromonadales bacterium TW-7

Site:
position = -54
score = 6.41738
sequence = AGCGTACAAGTGTACGCT

Gene: ATW7_12758: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -54
score = 6.41738
sequence = AGCGTACAAGTGTACGCT

Gene: PSHAa1491: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Pseudoalteromonas tunicata D2

Site:
position = -53
score = 6.10261
sequence = AGCGTACATCTGTTCGCT

Gene: PTD2_19707: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
 
Idiomarina baltica OS145
*
Idiomarina loihiensis L2TR

Site:
position = -59
score = 6.00214
sequence = GGCGTACAGTTGTACGCT

Gene: IL1287: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
 
CRON 8.
plsC
 
Pseudoalteromonas atlantica T6c

Gene: Patl_1030: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
*
Alteromonas macleodii 'Deep ecotype'

Site:
position = -121
score = 5.28145
sequence = ATCGGACAAGTGTACGCT

Gene: MADE_01586: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
*
Glaciecola sp. HTCC2999

Site:
position = -141
score = 6.32772
sequence = AGCGTACACGTGTTAGCT

Gene: GHTCC_010100001125: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
 
Colwellia psychrerythraea 34H

Gene: CPS_1016: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
*
Alteromonadales bacterium TW-7

Site:
position = -109
score = 6.13971
sequence = AGCGTACAGTTGTTCGCT

Gene: ATW7_11946: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -92
score = 5.86866
sequence = AGCGTACACTTGTGCGCT

Gene: PSHAa2584: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
*
Pseudoalteromonas tunicata D2

Site:
position = -79
score = 5.45342
sequence = GGCGTACAGTTGTGCGCT

Gene: PTD2_08769: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
 
Idiomarina baltica OS145

Gene: OS145_05885: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
 
Idiomarina loihiensis L2TR

Gene: IL1952: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
rraB
 
Pseudoalteromonas atlantica T6c

Gene: Patl_1031: Ribonuclease E inhibitor RraB
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_01585: Ribonuclease E inhibitor RraB
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100001130: Ribonuclease E inhibitor RraB
 
Colwellia psychrerythraea 34H

Gene: CPS_1017: Ribonuclease E inhibitor RraB
 
Alteromonadales bacterium TW-7

Gene: ATW7_11941: Ribonuclease E inhibitor RraB
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa2583: Ribonuclease E inhibitor RraB
 
Pseudoalteromonas tunicata D2

Gene: PTD2_08774: Ribonuclease E inhibitor RraB
 
Idiomarina baltica OS145

Gene: OS145_05880: Ribonuclease E inhibitor RraB
 
Idiomarina loihiensis L2TR

Gene: IL1951: Ribonuclease E inhibitor RraB
Ribonuclease E inhibitor RraB
 
CRON 9.
desC
 
Pseudoalteromonas atlantica T6c
*
Alteromonas macleodii 'Deep ecotype'

Site:
position = -179
score = 5.77038
sequence = AGCTTACACTTGTGCGCT

Site:
position = -156
score = 6.33114
sequence = AGCGTACAACTGTACGCT

Gene: MADE_02772: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
*
Alteromonadales bacterium TW-7

Site:
position = -101
score = 5.89566
sequence = AGCGTACACTTGTAGGCT

Site:
position = -127
score = 5.86866
sequence = AGCGTACACTTGTGCGCT

Gene: ATW7_07904: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -133
score = 5.31243
sequence = GGCGCACACGTGTAAGCC

Site:
position = -160
score = 5.86866
sequence = AGCGTACACTTGTGCGCT

Gene: PSHAa1268: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
*
Pseudoalteromonas tunicata D2

Site:
position = -48
score = 4.95245
sequence = GACGTACACTTGTGCGCT

Site:
position = -22
score = 6.12767
sequence = AGCTAACACTTGTACGCT

Gene: PTD2_10629: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
desB
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_02773: Acyl-CoA delta-9-desaturase, DesB
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7

Gene: ATW7_07899: Acyl-CoA delta-9-desaturase, DesB
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa1269: Acyl-CoA delta-9-desaturase, DesB
 
Pseudoalteromonas tunicata D2

Gene: PTD2_10634: Acyl-CoA delta-9-desaturase, DesB
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Acyl-CoA delta-9-desaturase, DesB
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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