Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NagR - Xanthomonadales

Properties
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: N-acetylglucosamine utilization
Effector: N-acetylglucosamine
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 17 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Xylella fastidiosa 9a5c 6 2
Xanthomonas axonopodis pv. citri str. 306 6 5
Xanthomonas campestris pv. campestris str. ATCC 33913 7 6
Stenotrophomonas maltophilia K279a 9 4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nixD
 
Xylella fastidiosa 9a5c

Gene: XF2713: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
*
Xanthomonas axonopodis pv. citri str. 306

Site:
position = -352
score = 5.62505
sequence = GTTGACAACGCTGTCAGG

Gene: XAC3071: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
*
Xanthomonas campestris pv. campestris str. ATCC 33913

Site:
position = -355
score = 5.95923
sequence = GTTGACAACGCTGTCAAC

Gene: XCC2887: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
 
Stenotrophomonas maltophilia K279a
N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
 
CRON 2.
nagK2
*
Xylella fastidiosa 9a5c

Site:
position = -68
score = 5.70991
sequence = ATTGATACCGTTGTCATC

Gene: XF1460: Predicted N-acetylglucosamine kinase, glucokinase-like (EC 2.7.1.59)
*2
Xanthomonas axonopodis pv. citri str. 306

Site:
position = -82
score = 5.78807
sequence = ATTGACATCGTTGTCACC

Gene: XAC3120: Predicted N-acetylglucosamine kinase, glucokinase-like (EC 2.7.1.59)

Site:
position = -80
score = 5.6685
sequence = GCTGACAACGTTGTCTAC

Gene: XAC3070: Predicted N-acetylglucosamine kinase, glucokinase-like (EC 2.7.1.59)
*2
Xanthomonas campestris pv. campestris str. ATCC 33913

Site:
position = -81
score = 5.6685
sequence = GCTGACAACGTTGTCTAC

Gene: XCC2886: Predicted N-acetylglucosamine kinase, glucokinase-like (EC 2.7.1.59)

Site:
position = -83
score = 6.19809
sequence = ATTGACAGCGTTGTCATC

Gene: XCC2943: Predicted N-acetylglucosamine kinase, glucokinase-like (EC 2.7.1.59)
*
Stenotrophomonas maltophilia K279a

Site:
position = -89
score = 5.74666
sequence = GTTGACATCGTTGTCAGC

Gene: Smlt4025: Predicted N-acetylglucosamine kinase, glucokinase-like (EC 2.7.1.59)
Predicted N-acetylglucosamine kinase, glucokinase-like (EC 2.7.1.59)
nixC
 
Xylella fastidiosa 9a5c
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC3121: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC2944: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
 
Stenotrophomonas maltophilia K279a

Gene: Smlt4026: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
hex
 
Xylella fastidiosa 9a5c

Gene: XF0847: Beta-hexosaminidase (EC 3.2.1.52)
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC3074: Beta-hexosaminidase (EC 3.2.1.52)
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC2890: Beta-hexosaminidase (EC 3.2.1.52)
 
Stenotrophomonas maltophilia K279a

Gene: Smlt4027: Beta-hexosaminidase (EC 3.2.1.52)
Beta-hexosaminidase (EC 3.2.1.52)
 
CRON 3.
XF1461
*
Xylella fastidiosa 9a5c

Site:
position = -298
score = 5.70991
sequence = GATGACAACGGTATCAAT

Gene: XF1461: hypothetical protein
 
Xanthomonas axonopodis pv. citri str. 306
 
Xanthomonas campestris pv. campestris str. ATCC 33913
 
Stenotrophomonas maltophilia K279a
hypothetical protein
nagP
 
Xylella fastidiosa 9a5c

Gene: XF1462: N-acetylglucosamine transporter, NagP
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC0712: N-acetylglucosamine transporter, NagP
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC3413: N-acetylglucosamine transporter, NagP
*
Stenotrophomonas maltophilia K279a

Site:
position = -307
score = 5.74666
sequence = GCTGACAACGATGTCAAC

Gene: Smlt4023: N-acetylglucosamine transporter, NagP
N-acetylglucosamine transporter, NagP
nagR
 
Xylella fastidiosa 9a5c

Gene: XF1463: Transcriptional regulator of N-acetylglucosamine utilization, LacI family
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC0713: Transcriptional regulator of N-acetylglucosamine utilization, LacI family
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC3412: Transcriptional regulator of N-acetylglucosamine utilization, LacI family
 
Stenotrophomonas maltophilia K279a

Gene: Smlt4022: Transcriptional regulator of N-acetylglucosamine utilization, LacI family
Transcriptional regulator of N-acetylglucosamine utilization, LacI family
nagB2
 
Xylella fastidiosa 9a5c

Gene: XF1464: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC0714: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC3411: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
 
Stenotrophomonas maltophilia K279a

Gene: Smlt4021: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
nagA
 
Xylella fastidiosa 9a5c

Gene: XF1465: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC0715: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC3410: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Stenotrophomonas maltophilia K279a

Gene: Smlt4020: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
CRON 4.
naxA
 
Xylella fastidiosa 9a5c

Gene: XF2137: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
*
Xanthomonas axonopodis pv. citri str. 306

Site:
position = -177
score = 5.65397
sequence = GATGACAACGTTGCCAGT

Gene: XAC3168: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
*
Xanthomonas campestris pv. campestris str. ATCC 33913

Site:
position = -178
score = 5.35022
sequence = GATGACAACGATGGCACT

Gene: XCC3045: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
*
Stenotrophomonas maltophilia K279a

Site:
position = -94
score = 5.66646
sequence = ATTGACAGCGTTGTCAGG

Gene: Smlt2566: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
 
CRON 5.
nixA
 
Xylella fastidiosa 9a5c
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC0716: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
*
Xanthomonas campestris pv. campestris str. ATCC 33913

Site:
position = -340
score = 5.56221
sequence = GCTGATAACGTTGTCAGC

Gene: XCC3408: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
 
Stenotrophomonas maltophilia K279a
N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
 
CRON 6.
nixB
 
Xylella fastidiosa 9a5c
*
Xanthomonas axonopodis pv. citri str. 306

Site:
position = -160
score = 5.74666
sequence = GTTGACACCGATGTCATC

Gene: XAC0544: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
*
Xanthomonas campestris pv. campestris str. ATCC 33913

Site:
position = -161
score = 5.74666
sequence = GTTGACACCGATGTCATC

Gene: XCC0531: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
 
Stenotrophomonas maltophilia K279a
N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
 
CRON 7.
chiA
 
Xylella fastidiosa 9a5c
 
Xanthomonas axonopodis pv. citri str. 306
 
Xanthomonas campestris pv. campestris str. ATCC 33913
*
Stenotrophomonas maltophilia K279a

Site:
position = -155
score = 5.63316
sequence = GATGACAACGTTGTCCCC

Gene: Smlt0682: Chitinase (EC 3.2.1.14)
Chitinase (EC 3.2.1.14)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD