Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NagR - Oceanospirillales/Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: N-acetylglucosamine utilization
Effector: N-acetylglucosamine
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 19 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Hahella chejuensis KCTC 2396
Marinobacter aqueolei
Marinobacter sp. ELB17
Oceanobacter sp. RED65
Oceanospirillum sp. MED92
Marinomonas sp. MWYL1
Saccharophagus degradans 2-40 9 4
Teredinibacter turnerae T7901 8 3
Cellvibrio japonicus Ueda107 13 7
Chromohalobacter salexigens DSM 3043
Reinekea sp. MED297
Alcanivorax borkumensis SK2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
cbp
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
*
Cellvibrio japonicus Ueda107

Site:
position = -139
score = 5.61722
sequence = AAAGGCAACGTTGTCATT

Gene: CJA_2191: chitin-binding protein A
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
chitin-binding protein A
 
CRON 2.
chiA
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
*
Saccharophagus degradans 2-40

Site:
position = -200
score = 5.55296
sequence = TTTGACAACGTTGTCTTT

Gene: Sde_3605: Chitinase (EC 3.2.1.14)
*
Teredinibacter turnerae T7901

Site:
position = -184
score = 5.44667
sequence = TCTGACAACGTTGTCTTT

Site:
position = -213
score = 6.01365
sequence = ATTGACAACGTTGTCTTC

Gene: TERTU_0285: Chitinase (EC 3.2.1.14)
 
Cellvibrio japonicus Ueda107

Gene: CJA_2611: Chitinase (EC 3.2.1.14)
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297

Gene: MED297_00800: Chitinase (EC 3.2.1.14)
 
Alcanivorax borkumensis SK2
Chitinase (EC 3.2.1.14)
 
CRON 3.
chiD
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
*
Saccharophagus degradans 2-40

Site:
position = -257
score = 5.31347
sequence = AGATACAACGTTGTCATT

Site:
position = -288
score = 5.3555
sequence = TTTGACAACGTTGTCTAT

Gene: Sde_3982: Chitodextrinase (EC 3.2.1.14)
 
Teredinibacter turnerae T7901
*
Cellvibrio japonicus Ueda107

Site:
position = -350
score = 5.24922
sequence = TTTGACAACGTTGTCTCT

Gene: CJA_0988: Chitodextrinase (EC 3.2.1.14)
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Chitodextrinase (EC 3.2.1.14)
 
CRON 4.
omp_nag
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
*
Saccharophagus degradans 2-40

Site:
position = -141
score = 5.23531
sequence = TTTGACAACGTTGTCAAA

Site:
position = -106
score = 5.55296
sequence = CATGACAACGTTGTCCAT

Gene: Sde_3035: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
*
Teredinibacter turnerae T7901

Site:
position = -164
score = 6.01365
sequence = GTTGACAACGTTGTCTTT

Site:
position = -96
score = 5.86301
sequence = CATGACAACGTTGTCATA

Gene: TERTU_0808: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
nagK
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40

Gene: Sde_3036: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
 
Teredinibacter turnerae T7901

Gene: TERTU_0810: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
*
Cellvibrio japonicus Ueda107

Site:
position = -252
score = 4.97992
sequence = TTTGACAACGTTGTCTCG

Gene: CJA_1160: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
hex
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40

Gene: Sde_3037: Beta-N-acetylhexosaminidase
 
Teredinibacter turnerae T7901

Gene: TERTU_0811: Beta-N-acetylhexosaminidase
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Beta-N-acetylhexosaminidase
nagP
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40

Gene: Sde_3038: N-acetylglucosamine transporter, NagP
 
Teredinibacter turnerae T7901

Gene: TERTU_0812: N-acetylglucosamine transporter, NagP
 
Cellvibrio japonicus Ueda107

Gene: CJA_1161: N-acetylglucosamine transporter, NagP
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
N-acetylglucosamine transporter, NagP
nagX
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40

Gene: Sde_3039: N-acetylglucosamine related transporter, NagX
 
Teredinibacter turnerae T7901

Gene: TERTU_0813: N-acetylglucosamine related transporter, NagX
 
Cellvibrio japonicus Ueda107

Gene: CJA_1162: N-acetylglucosamine related transporter, NagX
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
N-acetylglucosamine related transporter, NagX
nagA
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40

Gene: Sde_3040: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Teredinibacter turnerae T7901

Gene: TERTU_0814: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Cellvibrio japonicus Ueda107

Gene: CJA_1163: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
nagB
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107

Gene: CJA_1164: glucosamine-6-phosphate isomerase
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
glucosamine-6-phosphate isomerase
nagB2
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
*
Saccharophagus degradans 2-40

Site:
position = -134
score = 5.67947
sequence = AATGACAACGTTGTCTCG

Gene: Sde_3041: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
*
Teredinibacter turnerae T7901

Site:
position = -59
score = 6.63441
sequence = AATGACAACGTTGTCATT

Gene: TERTU_0815: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
 
CRON 5.
hex
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
*
Cellvibrio japonicus Ueda107

Site:
position = -81
score = 5.24922
sequence = CTGGACAACGTTGTCAGT

Gene: CJA_0287: Beta-hexosaminidase (EC 3.2.1.52)
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Beta-hexosaminidase (EC 3.2.1.52)
 
CRON 6.
omp_nag
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40

Gene: Sde_1093: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
 
Teredinibacter turnerae T7901

Gene: TERTU_4665: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
*3
Cellvibrio japonicus Ueda107

Site:
position = -223
score = 5.23621
sequence = ATTGACAGCGCTGTCACA

Gene: CJA_1069: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor

Site:
position = -213
score = 6.04205
sequence = ATTGACAGCGCTGTCATT

Gene: CJA_3072: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor

Site:
position = -121
score = 5.47711
sequence = GTTGACAACGTTGTCCGT

Site:
position = -85
score = 4.93826
sequence = ATCGACAACGTTGTCTTA

Gene: CJA_1157: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
trpX
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 2
Cellvibrio japonicus Ueda107

Gene: CJA_1070: Tryptophan halogenase

Gene: CJA_1159: Tryptophan halogenase
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Tryptophan halogenase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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