Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NagR - Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: N-acetylglucosamine utilization
Effector: N-acetylglucosamine
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 27 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudoalteromonas atlantica T6c
Alteromonas macleodii 'Deep ecotype'
Glaciecola sp. HTCC2999
Colwellia psychrerythraea 34H 15 11
Alteromonadales bacterium TW-7 8 3
Pseudoalteromonas haloplanktis TAC125
Pseudoalteromonas tunicata D2 14 9
Idiomarina baltica OS145
Idiomarina loihiensis L2TR
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nagB
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
*
Colwellia psychrerythraea 34H

Site:
position = -116
score = 6.04205
sequence = ATTGACAGCGCTGTCATT

Gene: CPS_1008: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAb0148: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
*
Pseudoalteromonas tunicata D2

Site:
position = -139
score = 5.93486
sequence = AATGACAGCGTTGTCATA

Gene: PTD2_18205: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
 
CRON 2.
pgi2
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
*
Colwellia psychrerythraea 34H

Site:
position = -135
score = 6.04205
sequence = ATTGACAGCGCTGTCATT

Gene: CPS_1020: Glucose-6-phosphate isomerase (EC 5.3.1.9)
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
*
Pseudoalteromonas tunicata D2

Site:
position = -162
score = 5.58971
sequence = GATGACAACGGTGTCAAA

Site:
position = -129
score = 6.19809
sequence = GTTGACAGCGTTGTCATT

Gene: PTD2_17630: Glucose-6-phosphate isomerase (EC 5.3.1.9)
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Glucose-6-phosphate isomerase (EC 5.3.1.9)
 
CRON 3.
nagR
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
*
Colwellia psychrerythraea 34H

Site:
position = -138
score = 6.04205
sequence = AATGACAGCGCTGTCAAT

Gene: CPS_1019: Transcriptional regulator of N-acetylglucosamine utilization, LacI family
 
Alteromonadales bacterium TW-7

Gene: ATW7_01295: Transcriptional regulator of N-acetylglucosamine utilization, LacI family
 
Pseudoalteromonas haloplanktis TAC125
*
Pseudoalteromonas tunicata D2

Site:
position = -204
score = 5.58971
sequence = TTTGACACCGTTGTCATC

Site:
position = -237
score = 6.19809
sequence = AATGACAACGCTGTCAAC

Gene: PTD2_17625: Transcriptional regulator of N-acetylglucosamine utilization, LacI family
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Transcriptional regulator of N-acetylglucosamine utilization, LacI family
 
CRON 4.
nagS2
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
*2
Colwellia psychrerythraea 34H

Site:
position = -283
score = 5.75131
sequence = AATGATATCGTTGTCAAT

Gene: CPS_2381: Putative sulfatase (EC 3.1.6.-)

Site:
position = 2
score = 5.74435
sequence = GTTGACAACGTTATCATG

Gene: CPS_2358: Putative sulfatase (EC 3.1.6.-)
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Putative sulfatase (EC 3.1.6.-)
 
CRON 5.
omp_nag
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
*2
Colwellia psychrerythraea 34H

Site:
position = -111
score = 5.55386
sequence = ATTGACAACGATATCAAT

Gene: CPS_2359: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor

Site:
position = -109
score = 5.93486
sequence = TATGACAGCGTTGTCATT

Gene: CPS_1021: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
*
Alteromonadales bacterium TW-7

Site:
position = -130
score = 6.16766
sequence = AATGACAACGCTGTCATG

Gene: ATW7_01300: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
 
Pseudoalteromonas haloplanktis TAC125
*2
Pseudoalteromonas tunicata D2

Site:
position = -73
score = 6.35414
sequence = GATGACAGCGTTGTCATC

Gene: PTD2_17650: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor

Site:
position = -71
score = 5.66556
sequence = TATGACAGCGTTGTCATG

Gene: PTD2_17670: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
ATW7_01305
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7

Gene: ATW7_01305: Pass1-related protein
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Pass1-related protein
hex
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_1025: Beta-hexosaminidase (EC 3.2.1.52)
 
Alteromonadales bacterium TW-7

Gene: ATW7_01310: Beta-hexosaminidase (EC 3.2.1.52)
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Beta-hexosaminidase (EC 3.2.1.52)
trpX
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 2
Colwellia psychrerythraea 34H

Gene: CPS_1023: Tryptophan halogenase

Gene: CPS_1022: Tryptophan halogenase
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
*4
Pseudoalteromonas tunicata D2

Gene: PTD2_17655: Tryptophan halogenase

Gene: PTD2_17680: Tryptophan halogenase

Gene: PTD2_17675: Tryptophan halogenase

Site:
position = -262
score = 6.0504
sequence = GGTGACAACGCTGTCATC

Gene: PTD2_17660: Tryptophan halogenase
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Tryptophan halogenase
 
CRON 6.
bglX
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
*
Colwellia psychrerythraea 34H

Site:
position = -70
score = 5.75131
sequence = ATTGACAACGATATCATT

Gene: CPS_2379: Beta-glucosidase (EC 3.2.1.21)
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Beta-glucosidase (EC 3.2.1.21)
 
CRON 7.
pckA
 
Pseudoalteromonas atlantica T6c

Gene: Patl_2282: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_03951: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100007187: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
 
Colwellia psychrerythraea 34H

Gene: CPS_4595: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
*
Alteromonadales bacterium TW-7

Site:
position = -202
score = 5.10152
sequence = GATGATACCGGTGTCATA

Site:
position = -171
score = 5.64503
sequence = AATGACACCGGTATCATT

Gene: ATW7_17462: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa0228: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
*
Pseudoalteromonas tunicata D2

Site:
position = -201
score = 5.37573
sequence = AATGATACCGGTGTCATG

Site:
position = -169
score = 5.33432
sequence = GATGACACCGGTATCATG

Gene: PTD2_16786: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
 
Idiomarina baltica OS145

Gene: OS145_02115: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
 
Idiomarina loihiensis L2TR

Gene: IL0273: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
 
CRON 8.
CPS_2383
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
*
Colwellia psychrerythraea 34H

Site:
position = -132
score = 5.55386
sequence = ATTGATATCGTTGTCAAT

Gene: CPS_2383: Putative surface protein
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Putative surface protein
 
CRON 9.
nagK
 
Pseudoalteromonas atlantica T6c

Gene: Patl_0124: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_00859: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
 
Glaciecola sp. HTCC2999
*
Colwellia psychrerythraea 34H

Site:
position = -70
score = 6.43696
sequence = AATGACAACGCTGTCATT

Gene: CPS_1026: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
*
Alteromonadales bacterium TW-7

Site:
position = -103
score = 6.43696
sequence = AATGACAACGCTGTCATT

Gene: ATW7_01315: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
 
Pseudoalteromonas haloplanktis TAC125
*
Pseudoalteromonas tunicata D2

Site:
position = -117
score = 6.43696
sequence = AATGACAACGCTGTCATT

Gene: PTD2_18190: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
nagB2
 2
Pseudoalteromonas atlantica T6c

Gene: Patl_4173: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)

Gene: Patl_0131: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7

Gene: ATW7_01320: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
nagA
 
Pseudoalteromonas atlantica T6c

Gene: Patl_4174: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_00860: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_1027: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Alteromonadales bacterium TW-7

Gene: ATW7_01325: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAb0157: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_18195: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
nagP
 
Pseudoalteromonas atlantica T6c

Gene: Patl_4175: N-acetyl glucosamine transporter, NagP
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_1028: N-acetyl glucosamine transporter, NagP
 
Alteromonadales bacterium TW-7

Gene: ATW7_01330: N-acetyl glucosamine transporter, NagP
 
Pseudoalteromonas haloplanktis TAC125
*
Pseudoalteromonas tunicata D2

Site:
position = -158
score = 5.3555
sequence = TATGATAGCGCTGTCATT

Gene: PTD2_07429: N-acetyl glucosamine transporter, NagP
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
N-acetyl glucosamine transporter, NagP
nagX
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
*
Colwellia psychrerythraea 34H

Site:
position = -55
score = 5.4757
sequence = AAAGACAGCGCTGTCTTT

Gene: CPS_0413: N-acetylglucosamine related transporter, NagX
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2

Gene: PTD2_18200: N-acetylglucosamine related transporter, NagX
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
N-acetylglucosamine related transporter, NagX
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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