Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Regulog Cobalamin - Corynebacteriaceae

Properties
Regulator type: RNA regulatory element
Name: Cobalamin
RFAM: RF00174
Regulation mode:
Biological process: Cobalamin biosynthesis
Effector: Adenosylcobalamin
Phylum: Actinobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Corynebacterium glutamicum ATCC 13032 5 1
Corynebacterium efficiens YS-314
Corynebacterium diphtheriae NCTC 13129 3 1
Corynebacterium aurimucosum ATCC 700975
Corynebacterium jeikeium K411
Corynebacterium urealyticum DSM 7109
Corynebacterium amycolatum SK46 5 2
Corynebacterium kroppenstedtii DSM 44385 4 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
metE
 
Corynebacterium glutamicum ATCC 13032

Gene: cg1290: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
 
Corynebacterium efficiens YS-314

Gene: CE1209: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium jeikeium K411

Gene: jk0234: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
 
Corynebacterium urealyticum DSM 7109

Gene: cur_1766: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
*
Corynebacterium amycolatum SK46

Site:
position = -218
score = 34.97
sequence = GTGTGTTTTGAGCTT...

Gene: CORAM0001_1322: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
*
Corynebacterium kroppenstedtii DSM 44385

Site:
position = -344
score = 55.43
sequence = CGATAAGTAATGCGA...

Gene: ckrop_1726: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
 
CRON 2.
btuF
 
Corynebacterium glutamicum ATCC 13032
 
Corynebacterium efficiens YS-314
 
Corynebacterium diphtheriae NCTC 13129

Gene: DIP1086: Vitamin B12 ABC transporter, B12-binding component BtuF
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium jeikeium K411
 
Corynebacterium urealyticum DSM 7109

Gene: cur_1342: Vitamin B12 ABC transporter, B12-binding component BtuF
 
Corynebacterium amycolatum SK46

Gene: CORAM0001_0685: Vitamin B12 ABC transporter, B12-binding component BtuF
*2
Corynebacterium kroppenstedtii DSM 44385

Site:
position = -136
score = 36.17
sequence = GGAATGCAGTGCGAA...

Gene: ckrop_0414: Vitamin B12 ABC transporter, B12-binding component BtuF

Gene: ckrop_1967: Vitamin B12 ABC transporter, B12-binding component BtuF
Vitamin B12 ABC transporter, B12-binding component BtuF
btuC
 
Corynebacterium glutamicum ATCC 13032
 
Corynebacterium efficiens YS-314
*
Corynebacterium diphtheriae NCTC 13129

Site:
position = -252
score = 84.29
sequence = GTGTTACACATTGAT...

Gene: DIP1084: Vitamin B12 ABC transporter, permease component BtuC
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium jeikeium K411
 
Corynebacterium urealyticum DSM 7109
 
Corynebacterium amycolatum SK46

Gene: CORAM0001_0683: Vitamin B12 ABC transporter, permease component BtuC
 2
Corynebacterium kroppenstedtii DSM 44385

Gene: ckrop_0415: Vitamin B12 ABC transporter, permease component BtuC

Gene: ckrop_1965: Vitamin B12 ABC transporter, permease component BtuC
Vitamin B12 ABC transporter, permease component BtuC
btuD
 
Corynebacterium glutamicum ATCC 13032
 
Corynebacterium efficiens YS-314
 
Corynebacterium diphtheriae NCTC 13129

Gene: DIP1085: Vitamin B12 ABC transporter, ATPase component BtuD / Adenosylcobinamide amidohydrolase (EC 3.5.1.90)
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium jeikeium K411
 
Corynebacterium urealyticum DSM 7109
 
Corynebacterium amycolatum SK46

Gene: CORAM0001_0684: Vitamin B12 ABC transporter, ATPase component BtuD / Adenosylcobinamide amidohydrolase (EC 3.5.1.90)
 2
Corynebacterium kroppenstedtii DSM 44385

Gene: ckrop_0416: Vitamin B12 ABC transporter, ATPase component BtuD / Adenosylcobinamide amidohydrolase (EC 3.5.1.90)

Gene: ckrop_1966: Vitamin B12 ABC transporter, ATPase component BtuD / Adenosylcobinamide amidohydrolase (EC 3.5.1.90)
Vitamin B12 ABC transporter, ATPase component BtuD / Adenosylcobinamide amidohydrolase (EC 3.5.1.90)
 
CRON 3.
cg0625
*
Corynebacterium glutamicum ATCC 13032

Site:
position = -217
score = 25.7
sequence = CAGGGGAATTTCGGT...

Gene: cg0625: Hypothetical protein
 
Corynebacterium efficiens YS-314

Gene: CE0547: Hypothetical protein
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium jeikeium K411
 
Corynebacterium urealyticum DSM 7109
 
Corynebacterium amycolatum SK46
 
Corynebacterium kroppenstedtii DSM 44385
Hypothetical protein
cg0624
 
Corynebacterium glutamicum ATCC 13032

Gene: cg0624: Hypothetical protein
 
Corynebacterium efficiens YS-314

Gene: CE0546: Hypothetical protein
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium jeikeium K411
 
Corynebacterium urealyticum DSM 7109
 
Corynebacterium amycolatum SK46
 
Corynebacterium kroppenstedtii DSM 44385
Hypothetical protein
cbrV
 
Corynebacterium glutamicum ATCC 13032

Gene: cg0623: Transmembrane component CbrV of energizing module of predicted cobalamin ECF transporter
 
Corynebacterium efficiens YS-314

Gene: CE0545: Transmembrane component CbrV of energizing module of predicted cobalamin ECF transporter
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium jeikeium K411
 
Corynebacterium urealyticum DSM 7109
 
Corynebacterium amycolatum SK46
 
Corynebacterium kroppenstedtii DSM 44385
Transmembrane component CbrV of energizing module of predicted cobalamin ECF transporter
cbrU
 
Corynebacterium glutamicum ATCC 13032

Gene: cg0622: Duplicated ATPase component CbrU of energizing module of predicted cobalamin ECF transporter
 
Corynebacterium efficiens YS-314

Gene: CE0544: Duplicated ATPase component CbrU of energizing module of predicted cobalamin ECF transporter
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium jeikeium K411
 
Corynebacterium urealyticum DSM 7109
 
Corynebacterium amycolatum SK46
 
Corynebacterium kroppenstedtii DSM 44385
Duplicated ATPase component CbrU of energizing module of predicted cobalamin ECF transporter
cbrT
 
Corynebacterium glutamicum ATCC 13032

Gene: cg0621: Substrate-specific component CbrT of predicted cobalamin ECF transporter
 
Corynebacterium efficiens YS-314

Gene: CE0543: Substrate-specific component CbrT of predicted cobalamin ECF transporter
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium jeikeium K411
 
Corynebacterium urealyticum DSM 7109
 
Corynebacterium amycolatum SK46
 
Corynebacterium kroppenstedtii DSM 44385
Substrate-specific component CbrT of predicted cobalamin ECF transporter
 
CRON 4.
cbiM
 
Corynebacterium glutamicum ATCC 13032
 
Corynebacterium efficiens YS-314
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium jeikeium K411
 
Corynebacterium urealyticum DSM 7109
*
Corynebacterium amycolatum SK46

Site:
position = -325
score = 43.86
sequence = ATTCTGAGACGTGAT...

Gene: CORAM0001_2224: Substrate-specific component CbiM of cobalt ECF transporter
 
Corynebacterium kroppenstedtii DSM 44385
Substrate-specific component CbiM of cobalt ECF transporter
cbiN
 
Corynebacterium glutamicum ATCC 13032
 
Corynebacterium efficiens YS-314
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium jeikeium K411
 
Corynebacterium urealyticum DSM 7109
 
Corynebacterium amycolatum SK46

Gene: CORAM0001_2223: Additional substrate-specific component CbiN of cobalt ECF transporter
 
Corynebacterium kroppenstedtii DSM 44385
Additional substrate-specific component CbiN of cobalt ECF transporter
cbiQ
 
Corynebacterium glutamicum ATCC 13032
 
Corynebacterium efficiens YS-314
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium jeikeium K411
 
Corynebacterium urealyticum DSM 7109
 
Corynebacterium amycolatum SK46

Gene: CORAM0001_2222: Transmembrane component CbiQ of energizing module of cobalt ECF transporter
 
Corynebacterium kroppenstedtii DSM 44385
Transmembrane component CbiQ of energizing module of cobalt ECF transporter
cbiO
 
Corynebacterium glutamicum ATCC 13032
 
Corynebacterium efficiens YS-314
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium jeikeium K411
 
Corynebacterium urealyticum DSM 7109
 
Corynebacterium amycolatum SK46

Gene: CORAM0001_2221: ATPase component CbiO of energizing module of cobalt ECF transporter
 
Corynebacterium kroppenstedtii DSM 44385
ATPase component CbiO of energizing module of cobalt ECF transporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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