Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Cobalamin - Ralstonia

Properties
Regulator type: RNA regulatory element
Name: Cobalamin
RFAM: RF00174
Regulation mode:
Biological process: Cobalamin biosynthesis
Effector: Adenosylcobalamin
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Ralstonia solanacearum GMI1000 10 2
Ralstonia pickettii 12J 7 1
Ralstonia metallidurans CH34 7 1
Ralstonia eutropha JMP134 7 1
Ralstonia eutropha H16 7 1
Cupriavidus taiwanensis 7 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
btuB
*
Ralstonia solanacearum GMI1000

Site:
position = -396
score = 48.99
sequence = GTTACACTCGCCGCG...

Gene: RS02718: Outer membrane vitamin B12 receptor BtuB
*
Ralstonia pickettii 12J

Site:
position = -389
score = 64.85
sequence = TTAAACTTCGCCCCG...

Gene: Rpic_2667: Outer membrane vitamin B12 receptor BtuB
*
Ralstonia metallidurans CH34

Site:
position = -260
score = 45.08
sequence = TACACTCGCCCCCGT...

Gene: Rmet_2789: Outer membrane vitamin B12 receptor BtuB
*
Ralstonia eutropha JMP134

Site:
position = -322
score = 47.69
sequence = CACTCGCGCACGTTC...

Gene: Reut_A0654: Outer membrane vitamin B12 receptor BtuB
*
Ralstonia eutropha H16

Site:
position = -219
score = 24.08
sequence = ACCGGCCACACGCCA...

Gene: H16_A2972: Outer membrane vitamin B12 receptor BtuB
*
Cupriavidus taiwanensis

Site:
position = -163
score = 26.98
sequence = GACCGGCCACACGCC...

Gene: RALTA_A2446: Outer membrane vitamin B12 receptor BtuB
Outer membrane vitamin B12 receptor BtuB
btuC
 
Ralstonia solanacearum GMI1000

Gene: RS02719: Vitamin B12 ABC transporter, permease component BtuC
 
Ralstonia pickettii 12J

Gene: Rpic_2666: Vitamin B12 ABC transporter, permease component BtuC
 
Ralstonia metallidurans CH34

Gene: Rmet_2788: Vitamin B12 ABC transporter, permease component BtuC
 
Ralstonia eutropha JMP134

Gene: Reut_A0655: Vitamin B12 ABC transporter, permease component BtuC
 
Ralstonia eutropha H16

Gene: H16_A2971: Vitamin B12 ABC transporter, permease component BtuC
 
Cupriavidus taiwanensis

Gene: RALTA_A2445: Vitamin B12 ABC transporter, permease component BtuC
Vitamin B12 ABC transporter, permease component BtuC
btuD
 
Ralstonia solanacearum GMI1000

Gene: RS02720: Vitamin B12 ABC transporter, ATPase component BtuD
 
Ralstonia pickettii 12J

Gene: Rpic_2665: Vitamin B12 ABC transporter, ATPase component BtuD
 
Ralstonia metallidurans CH34

Gene: Rmet_2787: Vitamin B12 ABC transporter, ATPase component BtuD
 
Ralstonia eutropha JMP134

Gene: Reut_A0656: Vitamin B12 ABC transporter, ATPase component BtuD
 
Ralstonia eutropha H16

Gene: H16_A2970: Vitamin B12 ABC transporter, ATPase component BtuD
 
Cupriavidus taiwanensis

Gene: RALTA_A2444: Vitamin B12 ABC transporter, ATPase component BtuD
Vitamin B12 ABC transporter, ATPase component BtuD
btuR
 
Ralstonia solanacearum GMI1000

Gene: RSp0616: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
 
Ralstonia pickettii 12J

Gene: Rpic_2664: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
 
Ralstonia metallidurans CH34

Gene: Rmet_2786: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
 
Ralstonia eutropha JMP134

Gene: Reut_A0657: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
 
Ralstonia eutropha H16

Gene: H16_A2969: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
 
Cupriavidus taiwanensis

Gene: RALTA_A2443: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
cobT
 
Ralstonia solanacearum GMI1000

Gene: RSc2397: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
 
Ralstonia pickettii 12J

Gene: Rpic_2663: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
 
Ralstonia metallidurans CH34

Gene: Rmet_2785: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
 
Ralstonia eutropha JMP134

Gene: Reut_A0658: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
 
Ralstonia eutropha H16

Gene: H16_A2968: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
 
Cupriavidus taiwanensis

Gene: RALTA_A2442: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
cobS
 
Ralstonia solanacearum GMI1000

Gene: RSc2396: Cobalamin synthase
 
Ralstonia pickettii 12J

Gene: Rpic_2662: Cobalamin synthase
 
Ralstonia metallidurans CH34

Gene: Rmet_2784: Cobalamin synthase
 
Ralstonia eutropha JMP134

Gene: Reut_A0659: Cobalamin synthase
 
Ralstonia eutropha H16

Gene: H16_A2967: Cobalamin synthase
 
Cupriavidus taiwanensis

Gene: RALTA_A2441: Cobalamin synthase
Cobalamin synthase
cobC
 
Ralstonia solanacearum GMI1000

Gene: RS02727: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)
 
Ralstonia pickettii 12J

Gene: Rpic_2661: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)
 
Ralstonia metallidurans CH34

Gene: Rmet_2783: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)
 
Ralstonia eutropha JMP134

Gene: Reut_A0660: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)
 
Ralstonia eutropha H16

Gene: H16_A2966: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)
 
Cupriavidus taiwanensis

Gene: RALTA_A2440: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)
Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)
 
CRON 2.
hoxN
*
Ralstonia solanacearum GMI1000

Site:
position = -278
score = 121.48
sequence = CATCCCGCCTCACGA...

Gene: RSp0628: HoxN/HupN/NixA family cobalt transporter
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34
 
Ralstonia eutropha JMP134
 
Ralstonia eutropha H16
 
Cupriavidus taiwanensis
HoxN/HupN/NixA family cobalt transporter
cbiW
 
Ralstonia solanacearum GMI1000

Gene: RS03740: Putative 2Fe-2S ferredoxin CbiW involved in B12 biosynthesis
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34
 
Ralstonia eutropha JMP134
 
Ralstonia eutropha H16
 
Cupriavidus taiwanensis
Putative 2Fe-2S ferredoxin CbiW involved in B12 biosynthesis
cobN
 
Ralstonia solanacearum GMI1000

Gene: RSp0626: CobN component of cobalt chelatase involved in B12 biosynthesis
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34
 
Ralstonia eutropha JMP134
 
Ralstonia eutropha H16
 
Cupriavidus taiwanensis
CobN component of cobalt chelatase involved in B12 biosynthesis
chlID
 
Ralstonia solanacearum GMI1000

Gene: RS03742: ChlI component of cobalt chelatase involved in B12 biosynthesis / ChlD component of cobalt chelatase involved in B12 biosynthesis
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34
 
Ralstonia eutropha JMP134
 
Ralstonia eutropha H16
 
Cupriavidus taiwanensis
ChlI component of cobalt chelatase involved in B12 biosynthesis / ChlD component of cobalt chelatase involved in B12 biosynthesis
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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