Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Cobalamin - Shewanellaceae

Properties
Regulator type: RNA regulatory element
Name: Cobalamin
RFAM: RF00174
Regulation mode:
Biological process: Cobalamin biosynthesis
Effector: Adenosylcobalamin
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1 8 2
Shewanella putrefaciens CN-32 8 2
Shewanella sp W3-18-1 8 2
Shewanella sp ANA-3 10 2
Shewanella sp MR-4 10 2
Shewanella sp MR-7 10 2
Shewanella baltica OS155 8 2
Shewanella denitrificans OS217 1 1
Shewanella frigidimarina NCIMB 400 8 2
Shewanella amazonensis SB2B 8 2
Shewanella loihica PV-4 8 2
Shewanella pealeana ATCC 700345 8 2
Shewanella halifaxensis HAW-EB4 9 2
Shewanella piezotolerans WP3 8 2
Shewanella sediminis HAW-EB3 36 5
Shewanella woodyi ATCC 51908 8 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
cbiD
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
*
Shewanella sediminis HAW-EB3

Site:
position = -334
score = 112.16
sequence = AATTTTAACATTATC...

Gene: Ssed_2080: Cobalt-precorrin-6 synthase, anaerobic
 
Shewanella woodyi ATCC 51908
Cobalt-precorrin-6 synthase, anaerobic
cbiC
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2081: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
 
Shewanella woodyi ATCC 51908
Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
cbiET
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2082: CoCobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)
 
Shewanella woodyi ATCC 51908
CoCobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)
cbiL
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2083: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
 
Shewanella woodyi ATCC 51908
Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
cbiG
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2084: Cobalamin biosynthesis protein CbiG
 
Shewanella woodyi ATCC 51908
Cobalamin biosynthesis protein CbiG
cbiK
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2085: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
 
Shewanella woodyi ATCC 51908
Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
cbiH
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2086: Cobalt-precorrin-3b C17-methyltransferase
 
Shewanella woodyi ATCC 51908
Cobalt-precorrin-3b C17-methyltransferase
cbiF
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2087: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
 
Shewanella woodyi ATCC 51908
Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
cysG
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2088: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
 
Shewanella woodyi ATCC 51908
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
cbiB
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2089: Adenosylcobinamide-phosphate synthase
 
Shewanella woodyi ATCC 51908
Adenosylcobinamide-phosphate synthase
cobD
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2090: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
 
Shewanella woodyi ATCC 51908
L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
 
CRON 2.
cbiN
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
*
Shewanella sediminis HAW-EB3

Site:
position = -277
score = 90.02
sequence = TTTTACTCTTTGAAA...

Gene: Ssed_2092: Additional substrate-specific component CbiN of cobalt ECF transporter
 
Shewanella woodyi ATCC 51908
Additional substrate-specific component CbiN of cobalt ECF transporter
cbiM
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2093: Substrate-specific component CbiM of cobalt ECF transporter
 
Shewanella woodyi ATCC 51908
Substrate-specific component CbiM of cobalt ECF transporter
Ssed_2094
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2094: Additional component of cobalt ECF transporter
 
Shewanella woodyi ATCC 51908
Additional component of cobalt ECF transporter
cbiQ
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2095: Transmembrane component CbiQ of energizing module of cobalt ECF transporter
 
Shewanella woodyi ATCC 51908
Transmembrane component CbiQ of energizing module of cobalt ECF transporter
cbiO
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2096: ATPase component CbiO of energizing module of cobalt ECF transporter
 
Shewanella woodyi ATCC 51908
ATPase component CbiO of energizing module of cobalt ECF transporter
 
CRON 3.
btuB
*
Shewanella oneidensis MR-1

Site:
position = -338
score = 74.39
sequence = TTGAGTCAACCTTCT...

Gene: SO_0815: Outer membrane vitamin B12 receptor BtuB
*
Shewanella putrefaciens CN-32

Site:
position = -343
score = 73.17
sequence = TTTTTAGTCAACCTT...

Gene: Sputcn32_3176: Outer membrane vitamin B12 receptor BtuB
*
Shewanella sp W3-18-1

Site:
position = -341
score = 73.17
sequence = TTTAGTCAACCTTCT...

Gene: Sputw3181_0767: Outer membrane vitamin B12 receptor BtuB
*
Shewanella sp ANA-3

Site:
position = -339
score = 74.65
sequence = TTTTTAGTCAACCTT...

Gene: Shewana3_3472: Outer membrane vitamin B12 receptor BtuB
*
Shewanella sp MR-4

Site:
position = -341
score = 74.66
sequence = TTTTTAGTCAACCTT...

Gene: Shewmr4_3302: Outer membrane vitamin B12 receptor BtuB
*
Shewanella sp MR-7

Site:
position = -342
score = 74.16
sequence = TTTAGTCAACCTTCT...

Gene: Shewmr7_0651: Outer membrane vitamin B12 receptor BtuB
*
Shewanella baltica OS155

Site:
position = -342
score = 73.63
sequence = TTTAGTCAACCTTCT...

Gene: Sbal_0663: Outer membrane vitamin B12 receptor BtuB
*
Shewanella denitrificans OS217

Site:
position = -268
score = 73.0
sequence = TCTAGTCAACCTTTC...

Gene: Sden_0729: Outer membrane vitamin B12 receptor BtuB
*
Shewanella frigidimarina NCIMB 400

Site:
position = -354
score = 72.36
sequence = TAATAGTCAATCTTT...

Gene: Sfri_0824: Outer membrane vitamin B12 receptor BtuB
*
Shewanella amazonensis SB2B

Site:
position = -221
score = 91.17
sequence = CTTTATTGTCAGCCT...

Gene: Sama_2631: Outer membrane vitamin B12 receptor BtuB
*
Shewanella loihica PV-4

Site:
position = -316
score = 72.21
sequence = AATTTAGTCAACCTT...

Gene: Shew_2990: Outer membrane vitamin B12 receptor BtuB
*
Shewanella pealeana ATCC 700345

Site:
position = -346
score = 68.75
sequence = TATTTTAGTCAACTT...

Gene: Spea_3206: Outer membrane vitamin B12 receptor BtuB
*
Shewanella halifaxensis HAW-EB4

Site:
position = -336
score = 76.8
sequence = TATTTTAGTCAACTT...

Gene: Shal_3286: Outer membrane vitamin B12 receptor BtuB
*
Shewanella piezotolerans WP3

Site:
position = -321
score = 73.76
sequence = CTAACTAGTCAACTT...

Gene: swp_3945: Outer membrane vitamin B12 receptor BtuB
*2
Shewanella sediminis HAW-EB3

Site:
position = -361
score = 59.01
sequence = TATGCTGTCAATCTT...

Gene: Ssed_3559: Outer membrane vitamin B12 receptor BtuB

Site:
position = -339
score = 96.5
sequence = ATATTCGCATCGACT...

Gene: Ssed_2165: Outer membrane vitamin B12 receptor BtuB
*
Shewanella woodyi ATCC 51908

Site:
position = -331
score = 57.39
sequence = CCTAAGGCTTTATTA...

Gene: Swoo_3735: Outer membrane vitamin B12 receptor BtuB
Outer membrane vitamin B12 receptor BtuB
btuD
*
Shewanella oneidensis MR-1

Site:
position = -475
score = 57.83
sequence = TAAATGTCGCAGAAA...

Gene: SO_1033: Vitamin B12 ABC transporter, ATPase component BtuD
*
Shewanella putrefaciens CN-32

Site:
position = -355
score = 59.91
sequence = CCATAACGTCGCAGA...

Gene: Sputcn32_2963: Vitamin B12 ABC transporter, ATPase component BtuD
*
Shewanella sp W3-18-1

Site:
position = -339
score = 60.72
sequence = ATAACGTCGCAGAAA...

Gene: Sputw3181_0984: Vitamin B12 ABC transporter, ATPase component BtuD
*
Shewanella sp ANA-3

Site:
position = -348
score = 58.5
sequence = CTCAAAGGTCGCAGA...

Gene: Shewana3_3280: Vitamin B12 ABC transporter, ATPase component BtuD
*
Shewanella sp MR-4

Site:
position = -345
score = 59.44
sequence = CAAAGGTCGCAGAAA...

Gene: Shewmr4_0840: Vitamin B12 ABC transporter, ATPase component BtuD
*
Shewanella sp MR-7

Site:
position = -347
score = 59.31
sequence = CTCAAAGGTCGCAGA...

Gene: Shewmr7_3182: Vitamin B12 ABC transporter, ATPase component BtuD
*
Shewanella baltica OS155

Site:
position = -266
score = 53.55
sequence = TGCCGAGGCACACTG...

Gene: Sbal_3366: Vitamin B12 ABC transporter, ATPase component BtuD
 
Shewanella denitrificans OS217

Gene: Sden_1116: Vitamin B12 ABC transporter, ATPase component BtuD
*
Shewanella frigidimarina NCIMB 400

Site:
position = -211
score = 43.37
sequence = ATCTGCGTCGTAACC...

Gene: Sfri_0874: Vitamin B12 ABC transporter, ATPase component BtuD
*
Shewanella amazonensis SB2B

Site:
position = -250
score = 61.05
sequence = CGGTCATTCACGCCA...

Gene: Sama_0760: Vitamin B12 ABC transporter, ATPase component BtuD
*
Shewanella loihica PV-4

Site:
position = -281
score = 52.35
sequence = GCCTGCGCCGGGAGT...

Gene: Shew_0712: Vitamin B12 ABC transporter, ATPase component BtuD
*
Shewanella pealeana ATCC 700345

Site:
position = -272
score = 45.22
sequence = AGCTTATAATAAAAA...

Gene: Spea_3382: Vitamin B12 ABC transporter, ATPase component BtuD
*
Shewanella halifaxensis HAW-EB4

Site:
position = -283
score = 42.95
sequence = TAAATAAGAATGAAA...

Gene: Shal_3460: Vitamin B12 ABC transporter, ATPase component BtuD
*
Shewanella piezotolerans WP3

Site:
position = -204
score = 42.75
sequence = AAACTAAATTTGAGT...

Gene: swp_0994: Vitamin B12 ABC transporter, ATPase component BtuD
*2
Shewanella sediminis HAW-EB3

Site:
position = -534
score = 59.1
sequence = GGAGAGGATCGCAAA...

Gene: Ssed_3736: Vitamin B12 ABC transporter, ATPase component BtuD

Gene: Ssed_2164: Vitamin B12 ABC transporter, ATPase component BtuD
*
Shewanella woodyi ATCC 51908

Site:
position = -401
score = 44.14
sequence = AGGCAGATCCGCAAA...

Gene: Swoo_4086: Vitamin B12 ABC transporter, ATPase component BtuD
Vitamin B12 ABC transporter, ATPase component BtuD
btuC
 
Shewanella oneidensis MR-1

Gene: SO_1034: Vitamin B12 ABC transporter, permease component BtuC
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_2962: Vitamin B12 ABC transporter, permease component BtuC
 
Shewanella sp W3-18-1

Gene: Sputw3181_0985: Vitamin B12 ABC transporter, permease component BtuC
 
Shewanella sp ANA-3

Gene: Shewana3_3279: Vitamin B12 ABC transporter, permease component BtuC
 
Shewanella sp MR-4

Gene: Shewmr4_0841: Vitamin B12 ABC transporter, permease component BtuC
 
Shewanella sp MR-7

Gene: Shewmr7_3181: Vitamin B12 ABC transporter, permease component BtuC
 
Shewanella baltica OS155

Gene: Sbal_3365: Vitamin B12 ABC transporter, permease component BtuC
 
Shewanella denitrificans OS217

Gene: Sden_1117: Vitamin B12 ABC transporter, permease component BtuC
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_0875: Vitamin B12 ABC transporter, permease component BtuC
 
Shewanella amazonensis SB2B

Gene: Sama_0761: Vitamin B12 ABC transporter, permease component BtuC
 
Shewanella loihica PV-4

Gene: Shew_0713: Vitamin B12 ABC transporter, permease component BtuC
 
Shewanella pealeana ATCC 700345

Gene: Spea_3381: Vitamin B12 ABC transporter, permease component BtuC
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_3459: Vitamin B12 ABC transporter, permease component BtuC
 
Shewanella piezotolerans WP3

Gene: swp_0995: Vitamin B12 ABC transporter, permease component BtuC
 2
Shewanella sediminis HAW-EB3

Gene: Ssed_3735: Vitamin B12 ABC transporter, permease component BtuC

Gene: Ssed_2163: Vitamin B12 ABC transporter, permease component BtuC
 
Shewanella woodyi ATCC 51908

Gene: Swoo_4085: Vitamin B12 ABC transporter, permease component BtuC
Vitamin B12 ABC transporter, permease component BtuC
cobU
 
Shewanella oneidensis MR-1

Gene: SO_1037: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_2959: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
 
Shewanella sp W3-18-1

Gene: Sputw3181_0988: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
 
Shewanella sp ANA-3

Gene: Shewana3_3276: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
 
Shewanella sp MR-4

Gene: Shewmr4_0844: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
 
Shewanella sp MR-7

Gene: Shewmr7_3178: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
 
Shewanella baltica OS155

Gene: Sbal_3362: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_0878: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
 
Shewanella amazonensis SB2B

Gene: Sama_0764: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
 
Shewanella loihica PV-4

Gene: Shew_0716: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
 
Shewanella pealeana ATCC 700345

Gene: Spea_3378: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_3455: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
 
Shewanella piezotolerans WP3

Gene: swp_0998: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
 3
Shewanella sediminis HAW-EB3

Gene: Ssed_3732: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)

Gene: Ssed_2162: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)

Gene: Ssed_2160: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
 
Shewanella woodyi ATCC 51908

Gene: Swoo_4082: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
btuF
 
Shewanella oneidensis MR-1

Gene: SO_3709: Vitamin B12 ABC transporter, B12-binding component BtuF
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_2947: Vitamin B12 ABC transporter, B12-binding component BtuF
 
Shewanella sp W3-18-1

Gene: Sputw3181_0995: Vitamin B12 ABC transporter, B12-binding component BtuF
 
Shewanella sp ANA-3

Gene: Shewana3_3272: Vitamin B12 ABC transporter, B12-binding component BtuF
 
Shewanella sp MR-4

Gene: Shewmr4_0848: Vitamin B12 ABC transporter, B12-binding component BtuF
 
Shewanella sp MR-7

Gene: Shewmr7_3174: Vitamin B12 ABC transporter, B12-binding component BtuF
 
Shewanella baltica OS155

Gene: Sbal_3358: Vitamin B12 ABC transporter, B12-binding component BtuF
 
Shewanella denitrificans OS217

Gene: Sden_2853: Vitamin B12 ABC transporter, B12-binding component BtuF
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_0895: Vitamin B12 ABC transporter, B12-binding component BtuF
 
Shewanella amazonensis SB2B

Gene: Sama_2869: Vitamin B12 ABC transporter, B12-binding component BtuF
 
Shewanella loihica PV-4

Gene: Shew_0719: Vitamin B12 ABC transporter, B12-binding component BtuF
 
Shewanella pealeana ATCC 700345

Gene: Spea_3374: Vitamin B12 ABC transporter, B12-binding component BtuF
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_3452: Vitamin B12 ABC transporter, B12-binding component BtuF
 
Shewanella piezotolerans WP3

Gene: swp_1026: Vitamin B12 ABC transporter, B12-binding component BtuF
 2
Shewanella sediminis HAW-EB3

Gene: Ssed_3729: Vitamin B12 ABC transporter, B12-binding component BtuF

Gene: Ssed_2161: Vitamin B12 ABC transporter, B12-binding component BtuF
 
Shewanella woodyi ATCC 51908

Gene: Swoo_4079: Vitamin B12 ABC transporter, B12-binding component BtuF
Vitamin B12 ABC transporter, B12-binding component BtuF
cobC
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2159: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)
 
Shewanella woodyi ATCC 51908
Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)
cobT2
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2158: Predicted nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
 
Shewanella woodyi ATCC 51908
Predicted nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
cbiP
 
Shewanella oneidensis MR-1

Gene: SO_1038: Cobyric acid synthase
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_2958: Cobyric acid synthase
 
Shewanella sp W3-18-1

Gene: Sputw3181_0989: Cobyric acid synthase
 
Shewanella sp ANA-3

Gene: Shewana3_3275: Cobyric acid synthase
 
Shewanella sp MR-4

Gene: Shewmr4_0845: Cobyric acid synthase
 
Shewanella sp MR-7

Gene: Shewmr7_3177: Cobyric acid synthase
 
Shewanella baltica OS155

Gene: Sbal_3361: Cobyric acid synthase
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_0879: Cobyric acid synthase
 
Shewanella amazonensis SB2B

Gene: Sama_0765: Cobyric acid synthase
 
Shewanella loihica PV-4

Gene: Shew_0717: Cobyric acid synthase
 
Shewanella pealeana ATCC 700345

Gene: Spea_3377: Cobyric acid synthase
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_3454: Cobyric acid synthase
 
Shewanella piezotolerans WP3

Gene: swp_0999: Cobyric acid synthase
 2
Shewanella sediminis HAW-EB3

Gene: Ssed_3731: Cobyric acid synthase

Gene: Ssed_2157: Cobyric acid synthase
 
Shewanella woodyi ATCC 51908

Gene: Swoo_4081: Cobyric acid synthase
Cobyric acid synthase
cbiA
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2156: Cobyrinic acid A,C-diamide synthase
 
Shewanella woodyi ATCC 51908
Cobyrinic acid A,C-diamide synthase
cobS
 
Shewanella oneidensis MR-1

Gene: SO_1036: Cobalamin synthase
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_2960: Cobalamin synthase
 
Shewanella sp W3-18-1

Gene: Sputw3181_0987: Cobalamin synthase
 
Shewanella sp ANA-3

Gene: Shewana3_3277: Cobalamin synthase
 
Shewanella sp MR-4

Gene: Shewmr4_0843: Cobalamin synthase
 
Shewanella sp MR-7

Gene: Shewmr7_3179: Cobalamin synthase
 
Shewanella baltica OS155

Gene: Sbal_3363: Cobalamin synthase
 
Shewanella denitrificans OS217

Gene: Sden_1118: Cobalamin synthase
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_0877: Cobalamin synthase
 
Shewanella amazonensis SB2B

Gene: Sama_0763: Cobalamin synthase
 
Shewanella loihica PV-4

Gene: Shew_0715: Cobalamin synthase
 
Shewanella pealeana ATCC 700345

Gene: Spea_3379: Cobalamin synthase
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_3456: Cobalamin synthase
 
Shewanella piezotolerans WP3

Gene: swp_0997: Cobalamin synthase
 2
Shewanella sediminis HAW-EB3

Gene: Ssed_3733: Cobalamin synthase

Gene: Ssed_2155: Cobalamin synthase
 
Shewanella woodyi ATCC 51908

Gene: Swoo_4083: Cobalamin synthase
Cobalamin synthase
btuR
 
Shewanella oneidensis MR-1

Gene: SO_1039: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_2957: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
 
Shewanella sp W3-18-1

Gene: Sputw3181_0990: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
 
Shewanella sp ANA-3

Gene: Shewana3_3274: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
 
Shewanella sp MR-4

Gene: Shewmr4_0846: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
 
Shewanella sp MR-7

Gene: Shewmr7_3176: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
 
Shewanella baltica OS155

Gene: Sbal_3360: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
 
Shewanella denitrificans OS217

Gene: Sden_1119: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_0880: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
 
Shewanella amazonensis SB2B

Gene: Sama_0766: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
 
Shewanella loihica PV-4

Gene: Shew_0718: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
 
Shewanella pealeana ATCC 700345

Gene: Spea_3376: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_3453: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
 
Shewanella piezotolerans WP3

Gene: swp_1000: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
 2
Shewanella sediminis HAW-EB3

Gene: Ssed_3730: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)

Gene: Ssed_2154: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
 
Shewanella woodyi ATCC 51908

Gene: Swoo_4080: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
cobT
 
Shewanella oneidensis MR-1

Gene: SO_1035: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_2961: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
 
Shewanella sp W3-18-1

Gene: Sputw3181_0986: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
 
Shewanella sp ANA-3

Gene: Shewana3_3278: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
 
Shewanella sp MR-4

Gene: Shewmr4_0842: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
 
Shewanella sp MR-7

Gene: Shewmr7_3180: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
 
Shewanella baltica OS155

Gene: Sbal_3364: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_0876: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
 
Shewanella amazonensis SB2B

Gene: Sama_0762: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
 
Shewanella loihica PV-4

Gene: Shew_0714: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
 
Shewanella pealeana ATCC 700345

Gene: Spea_3380: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_3458: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
 
Shewanella piezotolerans WP3

Gene: swp_0996: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
 
Shewanella sediminis HAW-EB3

Gene: Ssed_3734: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
 
Shewanella woodyi ATCC 51908

Gene: Swoo_4084: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
SO3711
 
Shewanella oneidensis MR-1

Gene: SO_3711: Hypothetical protein
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_2948: Hypothetical protein
 
Shewanella sp W3-18-1

Gene: Sputw3181_0994: Hypothetical protein
 
Shewanella sp ANA-3

Gene: Shewana3_3273: Hypothetical protein
 
Shewanella sp MR-4

Gene: Shewmr4_0847: Hypothetical protein
 
Shewanella sp MR-7

Gene: Shewmr7_3175: Hypothetical protein
 
Shewanella baltica OS155

Gene: Sbal_3359: Hypothetical protein
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_0894: Hypothetical protein
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Hypothetical protein
Shal_3457
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_3457: hypothetical protein
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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