Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog TPP - Cyanobacteria

Properties
Regulator type: RNA regulatory element
Name: TPP
RFAM: RF00059
Regulation mode:
Biological process: Thiamine biosynthesis
Effector: Thiamine pyrophosphate
Phylum: Cyanobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Cyanothece sp. ATCC 51142 1 1
Cyanothece sp. PCC 7425 1 1
Cyanothece sp. PCC 8801 1 1
Gloeobacter violaceus PCC 7421 1 1
Microcystis aeruginosa NIES-843 1 1
Nostoc sp. PCC 7120 1 1
Prochlorococcus marinus str. MIT 9313 1 1
Synechococcus elongatus PCC 7942 1 1
Synechococcus sp. JA-3-3Ab 1 1
Synechococcus sp. PCC 7002 1 1
Synechococcus sp. WH 8102 1 1
Synechocystis sp. PCC 6803 1 1
Thermosynechococcus elongatus BP-1 1 1
Trichodesmium erythraeum IMS101 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
thiC
*
Cyanothece sp. ATCC 51142

Site:
position = -102
score = 67.78
sequence = TCCATAGCTAGGGGT...

Gene: cce_3025: Phosphomethylpyrimidine synthase
*
Cyanothece sp. PCC 7425

Site:
position = -103
score = 68.29
sequence = GCTCAAGCTAGGGGT...

Gene: Cyan7425_3220: Phosphomethylpyrimidine synthase
*
Cyanothece sp. PCC 8801

Site:
position = -106
score = 68.81
sequence = CTTATAGCTAGGGGT...

Gene: PCC8801_2662: Phosphomethylpyrimidine synthase
*
Gloeobacter violaceus PCC 7421

Site:
position = -105
score = 55.49
sequence = GTTCACGCTGGGGGT...

Gene: gvip148: Phosphomethylpyrimidine synthase
*
Microcystis aeruginosa NIES-843

Site:
position = -104
score = 65.39
sequence = GTCATAGCTAGGGGT...

Gene: MAE_43400: Phosphomethylpyrimidine synthase
*
Nostoc sp. PCC 7120

Site:
position = -105
score = 59.09
sequence = ACATCCATGCTAGGG...

Gene: all0982: Phosphomethylpyrimidine synthase
*
Prochlorococcus marinus str. MIT 9313

Site:
position = -147
score = 66.95
sequence = CAAAACACTAGGGGT...

Gene: PMT0160: Phosphomethylpyrimidine synthase
*
Synechococcus elongatus PCC 7942

Site:
position = -216
score = 61.24
sequence = TTGAGCAGGCTAGGG...

Gene: Synpcc7942_1096: Phosphomethylpyrimidine synthase
*
Synechococcus sp. JA-3-3Ab

Site:
position = -107
score = 66.15
sequence = CACAACACGCTAGGA...

Gene: CYA_0011: Phosphomethylpyrimidine synthase
*
Synechococcus sp. PCC 7002

Site:
position = -110
score = 68.27
sequence = TTGCCATAGCTAGGG...

Gene: SYNPCC7002_A0831: Phosphomethylpyrimidine synthase
*
Synechococcus sp. WH 8102

Site:
position = -101
score = 69.9
sequence = AACACCACTAGGGGT...

Gene: SYNW0140: Phosphomethylpyrimidine synthase
*
Synechocystis sp. PCC 6803

Site:
position = -102
score = 63.03
sequence = GCCATAGCTAGGGGT...

Gene: slr0118: Phosphomethylpyrimidine synthase
*
Thermosynechococcus elongatus BP-1

Site:
position = -106
score = 62.71
sequence = CGACATGCTAGGGGT...

Gene: null: Phosphomethylpyrimidine synthase
*
Trichodesmium erythraeum IMS101

Site:
position = -105
score = 69.4
sequence = CCCACTAAGCTAGGG...

Gene: Tery_2464: Phosphomethylpyrimidine synthase
Phosphomethylpyrimidine synthase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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