Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog FMN - Thermotogales

Properties
Regulator type: RNA regulatory element
Name: FMN
RFAM: RF00050
Regulation mode:
Biological process: Riboflavin biosynthesis
Effector: Flavin mononucleotide
Phylum: Thermotogae
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Fervidobacterium nodosum Rt17-B1 4 1
Petrotoga mobilis SJ95
Thermosipho africanus TCF52B
Thermosipho melanesiensis BI429 4 1
Thermotoga lettingae TMO
Thermotoga maritima MSB8 5 1
Thermotoga naphthophila RKU-10 5 1
Thermotoga neapolitana DSM 4359 5 1
Thermotoga petrophila RKU-1 5 1
Thermotoga sp. RQ2 5 1
Thermotogales bacterium TBF 19.5.1 4 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ribD
*
Fervidobacterium nodosum Rt17-B1

Site:
position = -239
score = 119.85
sequence = GGTACTCTCGGGGCA...

Gene: Fnod_1415: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
 
Petrotoga mobilis SJ95
 
Thermosipho africanus TCF52B

Gene: THA_262: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
*
Thermosipho melanesiensis BI429

Site:
position = -46
score = 119.46
sequence = TGCTATATGCATTTA...

Gene: Tmel_0045: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
 
Thermotoga lettingae TMO
*
Thermotoga maritima MSB8

Site:
position = -61
score = 115.06
sequence = GATGTGGAGGTTATA...

Gene: TM1828: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
*
Thermotoga naphthophila RKU-10

Site:
position = -180
score = 115.06
sequence = AACGCTCTCGGGGCA...

Gene: Tnap_0999: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
*
Thermotoga neapolitana DSM 4359

Site:
position = -60
score = 112.35
sequence = AGAGTGTAGACCATC...

Gene: CTN_0760: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
*
Thermotoga petrophila RKU-1

Site:
position = -61
score = 115.06
sequence = GATGTGGAGATTATA...

Gene: Tpet_1113: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
*
Thermotoga sp. RQ2

Site:
position = -180
score = 115.06
sequence = AACGCTCTCGGGGCA...

Gene: TRQ2_0993: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
*
Thermotogales bacterium TBF 19.5.1

Site:
position = -208
score = 119.79
sequence = AAATTCTCCGGGGCA...

Gene: Kole_1231: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
ribE
 
Fervidobacterium nodosum Rt17-B1

Gene: Fnod_1416: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Petrotoga mobilis SJ95
 
Thermosipho africanus TCF52B

Gene: THA_261: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Thermosipho melanesiensis BI429

Gene: Tmel_0044: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Thermotoga lettingae TMO
 
Thermotoga maritima MSB8

Gene: TM1827: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Thermotoga naphthophila RKU-10

Gene: Tnap_1000: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Thermotoga neapolitana DSM 4359

Gene: CTN_0759: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Thermotoga petrophila RKU-1

Gene: Tpet_1112: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Thermotoga sp. RQ2

Gene: TRQ2_0994: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Thermotogales bacterium TBF 19.5.1

Gene: Kole_1232: Riboflavin synthase alpha chain (EC 2.5.1.9)
Riboflavin synthase alpha chain (EC 2.5.1.9)
ribBA
 
Fervidobacterium nodosum Rt17-B1

Gene: Fnod_1417: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Petrotoga mobilis SJ95
 
Thermosipho africanus TCF52B

Gene: THA_260: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Thermosipho melanesiensis BI429

Gene: Tmel_0043: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Thermotoga lettingae TMO
 
Thermotoga maritima MSB8

Gene: TM1826: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Thermotoga naphthophila RKU-10

Gene: Tnap_1001: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Thermotoga neapolitana DSM 4359

Gene: CTN_0758: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Thermotoga petrophila RKU-1

Gene: Tpet_1111: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Thermotoga sp. RQ2

Gene: TRQ2_0995: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Thermotogales bacterium TBF 19.5.1

Gene: Kole_1233: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
ribH
 
Fervidobacterium nodosum Rt17-B1

Gene: Fnod_1418: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Petrotoga mobilis SJ95
 
Thermosipho africanus TCF52B

Gene: THA_259: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Thermosipho melanesiensis BI429

Gene: Tmel_0042: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Thermotoga lettingae TMO
 
Thermotoga maritima MSB8

Gene: TM1825: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Thermotoga naphthophila RKU-10

Gene: Tnap_1002: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Thermotoga neapolitana DSM 4359

Gene: CTN_0757: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Thermotoga petrophila RKU-1

Gene: Tpet_1110: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Thermotoga sp. RQ2

Gene: TRQ2_0996: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Thermotogales bacterium TBF 19.5.1

Gene: Kole_1234: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
TM1824
 
Fervidobacterium nodosum Rt17-B1

Gene: Fnod_1456: glycosyl transferase family protein
 
Petrotoga mobilis SJ95
 
Thermosipho africanus TCF52B
 
Thermosipho melanesiensis BI429
 
Thermotoga lettingae TMO
 
Thermotoga maritima MSB8

Gene: TM1824: glycosyl transferase family protein
 
Thermotoga naphthophila RKU-10

Gene: Tnap_1003: glycosyl transferase family protein
 
Thermotoga neapolitana DSM 4359

Gene: CTN_0756: glycosyl transferase family protein
 
Thermotoga petrophila RKU-1

Gene: Tpet_1109: glycosyl transferase family protein
 
Thermotoga sp. RQ2

Gene: TRQ2_0997: glycosyl transferase family protein
 
Thermotogales bacterium TBF 19.5.1
glycosyl transferase family protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD