Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog FMN - Bacillales

Properties
Regulator type: RNA regulatory element
Name: FMN
RFAM: RF00050
Regulation mode:
Biological process: Riboflavin biosynthesis
Effector: Flavin mononucleotide
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Anoxybacillus flavithermus WK1 4 1
Bacillus amyloliquefaciens FZB42 5 2
Bacillus cereus ATCC 14579 5 2
Bacillus clausii KSM-K16 4 2
Bacillus halodurans C-125 4 1
Bacillus licheniformis DSM 13 5 2
Bacillus pumilus SAFR-032 4 2
Bacillus subtilis subsp. subtilis str. 168 5 2
Geobacillus kaustophilus HTA426 5 2
Oceanobacillus iheyensis HTE831 4 2
Paenibacillus sp. JDR-2 5 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ribU
 
Anoxybacillus flavithermus WK1
*
Bacillus amyloliquefaciens FZB42

Site:
position = -149
score = 125.31
sequence = AGGTTCAGCAGACGT...

Gene: RBAM_021200: Substrate-specific component RibU of riboflavin ECF transporter
*
Bacillus cereus ATCC 14579

Site:
position = -322
score = 120.27
sequence = TCTATCTTCGGGGCA...

Gene: BC1482: Substrate-specific component RibU of riboflavin ECF transporter
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
*
Bacillus licheniformis DSM 13

Site:
position = -157
score = 124.26
sequence = AGGTTCCGCGCGTTT...

Gene: BLi02444: Substrate-specific component RibU of riboflavin ECF transporter
*
Bacillus pumilus SAFR-032

Site:
position = -146
score = 123.84
sequence = AGGTTCGTAAACGTT...

Gene: BPUM_2038: Substrate-specific component RibU of riboflavin ECF transporter
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -155
score = 122.74
sequence = AGGTTCATAAGCGTT...

Gene: BSU23050: Substrate-specific component RibU of riboflavin ECF transporter
*
Geobacillus kaustophilus HTA426

Site:
position = -158
score = 118.11
sequence = AGGTTTGCCGGCGTT...

Gene: GK1760: Substrate-specific component RibU of riboflavin ECF transporter
*
Oceanobacillus iheyensis HTE831

Site:
position = -153
score = 113.86
sequence = CGATCATGTTTGTGT...

Gene: OB2329: Substrate-specific component RibU of riboflavin ECF transporter
 
Paenibacillus sp. JDR-2
Substrate-specific component RibU of riboflavin ECF transporter
 
CRON 2.
impX
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42
 
Bacillus cereus ATCC 14579
*
Bacillus clausii KSM-K16

Site:
position = -250
score = 102.19
sequence = GGTATCTTCGGGGCA...

Gene: ABC3060: Predicted riboflavin transporter, EamA family
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13
 
Bacillus pumilus SAFR-032
 
Bacillus subtilis subsp. subtilis str. 168
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
*
Paenibacillus sp. JDR-2

Site:
position = -344
score = 106.42
sequence = AGGATCTTCGGGGCA...

Gene: Pjdr2_2015: Predicted riboflavin transporter, EamA family
Predicted riboflavin transporter, EamA family
 
CRON 3.
ribD
*
Anoxybacillus flavithermus WK1

Site:
position = -273
score = 120.9
sequence = GCATCCTTCGGGGCA...

Gene: Aflv_1015: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
*
Bacillus amyloliquefaciens FZB42

Site:
position = -133
score = 114.48
sequence = AGAGAAGCTATGCAA...

Gene: RBAM_021420: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
*2
Bacillus cereus ATCC 14579

Site:
position = -421
score = 116.52
sequence = GCATCCTTCGGGGTC...

Gene: BC4109: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)

Gene: BC3387: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
 
Bacillus clausii KSM-K16

Gene: ABC3987: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
*
Bacillus halodurans C-125

Site:
position = -437
score = 105.24
sequence = TTATCCTTCGGGGCT...

Gene: BH1554: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
*
Bacillus licheniformis DSM 13

Site:
position = -110
score = 108.03
sequence = AAGAGACTATGTAAA...

Gene: BLi02475: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
 2
Bacillus pumilus SAFR-032

Gene: BPUM_0703: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)

Gene: BPUM_3532: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -131
score = 101.45
sequence = ATGAGCCGCTATGCA...

Gene: BSU23280: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
*
Geobacillus kaustophilus HTA426

Site:
position = -208
score = 113.35
sequence = CCAATATGCGCACGG...

Gene: GK2297: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
 
Oceanobacillus iheyensis HTE831

Gene: OB0423: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
*
Paenibacillus sp. JDR-2

Site:
position = -452
score = 77.09
sequence = TTACCTTCGGGGCAG...

Gene: Pjdr2_2349: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
ribE
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1016: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_021410: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Bacillus cereus ATCC 14579

Gene: BC4110: Riboflavin synthase alpha chain (EC 2.5.1.9)
*
Bacillus clausii KSM-K16

Site:
position = -282
score = 108.65
sequence = CTCAACTTCGGGGCA...

Gene: ABC1811: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Bacillus halodurans C-125

Gene: BH1555: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Bacillus licheniformis DSM 13

Gene: BLi02474: Riboflavin synthase alpha chain (EC 2.5.1.9)
*
Bacillus pumilus SAFR-032

Site:
position = -255
score = 121.02
sequence = AAGAAAGCTATGAAC...

Gene: BPUM_2061: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU23270: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Geobacillus kaustophilus HTA426

Gene: GK2296: Riboflavin synthase alpha chain (EC 2.5.1.9)
*
Oceanobacillus iheyensis HTE831

Site:
position = -280
score = 113.05
sequence = GCTGTATGGATACGT...

Gene: OB3215: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_2350: Riboflavin synthase alpha chain (EC 2.5.1.9)
Riboflavin synthase alpha chain (EC 2.5.1.9)
ribBA
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1017: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_021400: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Bacillus cereus ATCC 14579

Gene: BC4111: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Bacillus clausii KSM-K16

Gene: ABC1812: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Bacillus halodurans C-125

Gene: BH1556: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Bacillus licheniformis DSM 13

Gene: BLi02473: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Bacillus pumilus SAFR-032
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU23260: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Geobacillus kaustophilus HTA426

Gene: GK2295: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_2351: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
ribH
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1018: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_021390: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Bacillus cereus ATCC 14579

Gene: BC4112: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Bacillus clausii KSM-K16

Gene: ABC1813: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Bacillus halodurans C-125

Gene: BH1557: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Bacillus licheniformis DSM 13

Gene: BLi02472: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2059: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU23250: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Geobacillus kaustophilus HTA426

Gene: GK2294: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Oceanobacillus iheyensis HTE831

Gene: OB3213: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_2352: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
ribB
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13
 
Bacillus pumilus SAFR-032

Gene: BPUM_2060: 3,4-dihydroxy-2-butanone 4-phosphate synthase
 
Bacillus subtilis subsp. subtilis str. 168
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831

Gene: OB3214: 3,4-dihydroxy-2-butanone 4-phosphate synthase
 
Paenibacillus sp. JDR-2
3,4-dihydroxy-2-butanone 4-phosphate synthase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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