Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog FMN - Staphylococcaceae

Properties
Regulator type: RNA regulatory element
Name: FMN
RFAM: RF00050
Regulation mode:
Biological process: Riboflavin biosynthesis
Effector: Flavin mononucleotide
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Macrococcus caseolyticus JCSC5402 5 2
Staphylococcus aureus subsp. aureus N315 5 2
Staphylococcus capitis SK14 5 2
Staphylococcus carnosus subsp. carnosus TM300 5 2
Staphylococcus epidermidis ATCC 12228 5 2
Staphylococcus haemolyticus JCSC1435 5 2
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 5 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ribU
*
Macrococcus caseolyticus JCSC5402

Site:
position = -42
score = 109.54
sequence = AGGTTTTCCTCCTCT...

Gene: MCCL_1136: Substrate-specific component RibU of riboflavin ECF transporter
*
Staphylococcus aureus subsp. aureus N315

Site:
position = -63
score = 122.94
sequence = AGGTTTTTTGTTGTG...

Gene: SA1316: Substrate-specific component RibU of riboflavin ECF transporter
*
Staphylococcus capitis SK14

Site:
position = -64
score = 113.67
sequence = AGGTTTTTTGTTGTG...

Gene: STACA0001_1730: Substrate-specific component RibU of riboflavin ECF transporter
*
Staphylococcus carnosus subsp. carnosus TM300

Site:
position = -61
score = 123.48
sequence = AGGGTTTATTTGTTG...

Gene: Sca_1116: Substrate-specific component RibU of riboflavin ECF transporter
*
Staphylococcus epidermidis ATCC 12228

Site:
position = -64
score = 113.36
sequence = AGGTTTTTTGTTGTT...

Gene: SE1174: Substrate-specific component RibU of riboflavin ECF transporter
*
Staphylococcus haemolyticus JCSC1435

Site:
position = -190
score = 120.79
sequence = TTCATCTTCGGGGTA...

Gene: SH1427: Substrate-specific component RibU of riboflavin ECF transporter
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Site:
position = -148
score = 125.81
sequence = TTCATCTTCGGGGTA...

Gene: SSP1262: Substrate-specific component RibU of riboflavin ECF transporter
Substrate-specific component RibU of riboflavin ECF transporter
 
CRON 2.
ribD
*
Macrococcus caseolyticus JCSC5402

Site:
position = -138
score = 112.41
sequence = AGGACACCATTAAGC...

Gene: MCCL_1455: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
*
Staphylococcus aureus subsp. aureus N315

Site:
position = -128
score = 123.35
sequence = GTTAATTATCGACAA...

Gene: SA1589: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
*
Staphylococcus capitis SK14

Site:
position = -134
score = 119.23
sequence = ATAATTACTCGACAA...

Gene: STACA0001_0662: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
*
Staphylococcus carnosus subsp. carnosus TM300

Site:
position = -176
score = 124.43
sequence = GAAGACGTCATTAAA...

Gene: Sca_1375: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
*
Staphylococcus epidermidis ATCC 12228

Site:
position = -151
score = 115.42
sequence = TTGAATTATCGACTT...

Gene: SE1441: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
*
Staphylococcus haemolyticus JCSC1435

Site:
position = -280
score = 115.43
sequence = AATTCTTTCGGGGCG...

Gene: SH1153: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Site:
position = -293
score = 124.96
sequence = TATTCTTTCGGGGCA...

Gene: SSP0995: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
ribE
 
Macrococcus caseolyticus JCSC5402

Gene: MCCL_1454: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Staphylococcus aureus subsp. aureus N315

Gene: SA1588: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Staphylococcus capitis SK14

Gene: STACA0001_0661: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_1374: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Staphylococcus epidermidis ATCC 12228

Gene: SE1440: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Staphylococcus haemolyticus JCSC1435

Gene: SH1154: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP0996: Riboflavin synthase alpha chain (EC 2.5.1.9)
Riboflavin synthase alpha chain (EC 2.5.1.9)
ribBA
 
Macrococcus caseolyticus JCSC5402

Gene: MCCL_1453: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Staphylococcus aureus subsp. aureus N315

Gene: SA1587: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Staphylococcus capitis SK14

Gene: STACA0001_0660: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_1373: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Staphylococcus epidermidis ATCC 12228

Gene: SE1439: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Staphylococcus haemolyticus JCSC1435

Gene: SH1155: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP0997: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
ribH
 
Macrococcus caseolyticus JCSC5402

Gene: MCCL_1452: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Staphylococcus aureus subsp. aureus N315

Gene: SA1586: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Staphylococcus capitis SK14

Gene: STACA0001_0659: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_1372: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Staphylococcus epidermidis ATCC 12228

Gene: SE1438: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Staphylococcus haemolyticus JCSC1435

Gene: SH1156: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP0998: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD