Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog FMN - Shewanellaceae

Properties
Regulator type: RNA regulatory element
Name: FMN
RFAM: RF00050
Regulation mode:
Biological process: Riboflavin biosynthesis
Effector: Flavin mononucleotide
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella amazonensis SB2B 1 1
Shewanella baltica OS155 1 1
Shewanella denitrificans OS217
Shewanella frigidimarina NCIMB 400 1 1
Shewanella halifaxensis HAW-EB4 1 1
Shewanella loihica PV-4 1 1
Shewanella oneidensis MR-1 1 1
Shewanella pealeana ATCC 700345 1 1
Shewanella piezotolerans WP3 1 1
Shewanella putrefaciens CN-32 1 1
Shewanella sediminis HAW-EB3 1 1
Shewanella sp ANA-3 1 1
Shewanella sp MR-4 1 1
Shewanella sp MR-7 1 1
Shewanella sp W3-18-1 1 1
Shewanella woodyi ATCC 51908 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ribB
*
Shewanella amazonensis SB2B

Site:
position = -208
score = 66.64
sequence = ATCCCTGTCAGCCAG...

Gene: Sama_0143: 3,4-dihydroxy-2-butanone 4-phosphate synthase
*
Shewanella baltica OS155

Site:
position = -420
score = 52.64
sequence = CAAATTCTCAGGGCG...

Gene: Sbal_4219: 3,4-dihydroxy-2-butanone 4-phosphate synthase
 
Shewanella denitrificans OS217
*
Shewanella frigidimarina NCIMB 400

Site:
position = -263
score = 113.09
sequence = ATAATTCTCAGGGCG...

Gene: Sfri_3868: 3,4-dihydroxy-2-butanone 4-phosphate synthase
*
Shewanella halifaxensis HAW-EB4

Site:
position = -432
score = 46.29
sequence = ATAATTCTCAGGGCG...

Gene: Shal_4187: 3,4-dihydroxy-2-butanone 4-phosphate synthase
*
Shewanella loihica PV-4

Site:
position = -368
score = 89.17
sequence = TACATTCTCAGGGCG...

Gene: Shew_0040: 3,4-dihydroxy-2-butanone 4-phosphate synthase
*
Shewanella oneidensis MR-1

Site:
position = -239
score = 43.22
sequence = TTTGCCACTAGCGAC...

Gene: SO_0142: 3,4-dihydroxy-2-butanone 4-phosphate synthase
*
Shewanella pealeana ATCC 700345

Site:
position = -306
score = 46.57
sequence = TAACTAGGGTCAGCA...

Gene: Spea_0131: 3,4-dihydroxy-2-butanone 4-phosphate synthase
*
Shewanella piezotolerans WP3

Site:
position = -242
score = 45.88
sequence = TGCTGCGCACTATGT...

Gene: swp_0169: 3,4-dihydroxy-2-butanone 4-phosphate synthase
*
Shewanella putrefaciens CN-32

Site:
position = -229
score = 49.47
sequence = TGGCAACAGTGCTGA...

Gene: Sputcn32_0134: 3,4-dihydroxy-2-butanone 4-phosphate synthase
*
Shewanella sediminis HAW-EB3

Site:
position = -455
score = 44.4
sequence = TAAATTCTCAGGGCG...

Gene: Ssed_4372: 3,4-dihydroxy-2-butanone 4-phosphate synthase
*
Shewanella sp ANA-3

Site:
position = -303
score = 42.23
sequence = ATGCCTATCGAGCGC...

Gene: Shewana3_0134: 3,4-dihydroxy-2-butanone 4-phosphate synthase
*
Shewanella sp MR-4

Site:
position = -323
score = 39.2
sequence = GCTTGTCTCGTTATG...

Gene: Shewmr4_0135: 3,4-dihydroxy-2-butanone 4-phosphate synthase
*
Shewanella sp MR-7

Site:
position = -259
score = 41.92
sequence = TTTGCCAGCATAGCA...

Gene: Shewmr7_0129: 3,4-dihydroxy-2-butanone 4-phosphate synthase
*
Shewanella sp W3-18-1

Site:
position = -397
score = 24.76
sequence = GAAACTCCCCACCGG...

Gene: Sputw3181_3938: 3,4-dihydroxy-2-butanone 4-phosphate synthase
*
Shewanella woodyi ATCC 51908

Site:
position = -401
score = 52.69
sequence = TAAATTCTCAGGGCG...

Gene: Swoo_4764: 3,4-dihydroxy-2-butanone 4-phosphate synthase
3,4-dihydroxy-2-butanone 4-phosphate synthase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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