Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PedR - Cyanobacteria

Properties
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: repressor (activator)
Biological process: Photosynthesis; Carbon fixation
Effector: Trx, thioredoxin protein
Phylum: Cyanobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 56 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Cyanothece sp. ATCC 51142 5 5
Cyanothece sp. PCC 7425 4 4
Cyanothece sp. PCC 8801 5 5
Gloeobacter violaceus PCC 7421
Microcystis aeruginosa NIES-843 4 4
Nostoc sp. PCC 7120 7 7
Prochlorococcus marinus str. MIT 9313 2 2
Synechococcus elongatus PCC 7942 2 2
Synechococcus sp. JA-3-3Ab 3 2
Synechococcus sp. PCC 7002 5 5
Synechococcus sp. WH 8102
Synechocystis sp. PCC 6803 8 8
Thermosynechococcus elongatus BP-1 2 2
Trichodesmium erythraeum IMS101 3 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
chlB
 
Cyanothece sp. ATCC 51142

Gene: cce_1954: Light-independent protochlorophyllide reductase subunit B
 
Cyanothece sp. PCC 7425

Gene: Cyan7425_3666: Light-independent protochlorophyllide reductase subunit B
 
Cyanothece sp. PCC 8801

Gene: PCC8801_2892: Light-independent protochlorophyllide reductase subunit B
 
Gloeobacter violaceus PCC 7421

Gene: gvip017: Light-independent protochlorophyllide reductase subunit B
*
Microcystis aeruginosa NIES-843

Site:
position = -319
score = 4.46396
sequence = AAGCAAAATTACCG

Gene: MAE_53860: Light-independent protochlorophyllide reductase subunit B
*
Nostoc sp. PCC 7120

Site:
position = -56
score = 3.71422
sequence = AAGCACTTATAGTC

Gene: alr3441: Light-independent protochlorophyllide reductase subunit B
 
Prochlorococcus marinus str. MIT 9313

Gene: PMT1216: Light-independent protochlorophyllide reductase subunit B
 
Synechococcus elongatus PCC 7942

Gene: Synpcc7942_1838: Light-independent protochlorophyllide reductase subunit B
 
Synechococcus sp. JA-3-3Ab

Gene: CYA_0895: Light-independent protochlorophyllide reductase subunit B
*
Synechococcus sp. PCC 7002

Site:
position = -14
score = 4.59658
sequence = GAGTAAAAATACCT

Gene: SYNPCC7002_A1652: Light-independent protochlorophyllide reductase subunit B
 
Synechococcus sp. WH 8102

Gene: SYNW1724: Light-independent protochlorophyllide reductase subunit B
*
Synechocystis sp. PCC 6803

Site:
position = -182
score = 3.39411
sequence = AAGCATTAAGAATT

Gene: slr0772: Light-independent protochlorophyllide reductase subunit B
 
Thermosynechococcus elongatus BP-1

Gene: null: Light-independent protochlorophyllide reductase subunit B
*
Trichodesmium erythraeum IMS101

Site:
position = -177
score = 4.09712
sequence = AGTTAAAAATACTT

Gene: Tery_3812: Light-independent protochlorophyllide reductase subunit B
Light-independent protochlorophyllide reductase subunit B
 
CRON 2.
chlL
*
Cyanothece sp. ATCC 51142

Site:
position = -155
score = 4.32968
sequence = AAGCAATTTTTCTC

Gene: cce_4532: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
 
Cyanothece sp. PCC 7425

Gene: Cyan7425_3939: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
*
Cyanothece sp. PCC 8801

Site:
position = -42
score = 4.16646
sequence = AGGCAAATACACTT

Gene: PCC8801_0791: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
 
Gloeobacter violaceus PCC 7421

Gene: gvip328: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
*
Microcystis aeruginosa NIES-843

Site:
position = -223
score = 3.57541
sequence = AAGTAAATGTATAA

Gene: MAE_16230: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
 
Nostoc sp. PCC 7120

Gene: all5078: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
 
Prochlorococcus marinus str. MIT 9313

Gene: PMT1217: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
 
Synechococcus elongatus PCC 7942

Gene: Synpcc7942_1419: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
 
Synechococcus sp. JA-3-3Ab

Gene: CYA_2382: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
 
Synechococcus sp. PCC 7002

Gene: SYNPCC7002_A2347: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
 
Synechococcus sp. WH 8102

Gene: SYNW1725: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
*
Synechocystis sp. PCC 6803

Site:
position = -178
score = 4.01522
sequence = AAGTTATTTTATTT

Site:
position = -196
score = 4.7505
sequence = AAGTAACTATACCC

Gene: slr0749: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
 
Thermosynechococcus elongatus BP-1

Gene: null: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
 
Trichodesmium erythraeum IMS101

Gene: Tery_1532: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
 
CRON 3.
sll0296
 
Cyanothece sp. ATCC 51142

Gene: cce_4661: Conserved hypothetical protein
 
Cyanothece sp. PCC 7425
 
Cyanothece sp. PCC 8801

Gene: PCC8801_0705: Conserved hypothetical protein
 
Gloeobacter violaceus PCC 7421
 
Microcystis aeruginosa NIES-843
 
Nostoc sp. PCC 7120
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus elongatus PCC 7942
 
Synechococcus sp. JA-3-3Ab
*
Synechococcus sp. PCC 7002

Site:
position = -63
score = 4.12899
sequence = AAGCATAAATTCCC

Gene: SYNPCC7002_A1792: Conserved hypothetical protein
 
Synechococcus sp. WH 8102
*
Synechocystis sp. PCC 6803

Site:
position = -349
score = 4.82382
sequence = GAGTAAATATACCT

Gene: sll0296: Conserved hypothetical protein
 
Thermosynechococcus elongatus BP-1
 
Trichodesmium erythraeum IMS101
Conserved hypothetical protein
 
CRON 4.
CYA_0085
 
Cyanothece sp. ATCC 51142
 
Cyanothece sp. PCC 7425
 
Cyanothece sp. PCC 8801
 
Gloeobacter violaceus PCC 7421
 
Microcystis aeruginosa NIES-843
 
Nostoc sp. PCC 7120
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus elongatus PCC 7942
*
Synechococcus sp. JA-3-3Ab

Site:
position = -109
score = 3.50942
sequence = AACCATATTTTCTC

Gene: CYA_0085: hypothetical protein
 
Synechococcus sp. PCC 7002
 
Synechococcus sp. WH 8102
 
Synechocystis sp. PCC 6803
 
Thermosynechococcus elongatus BP-1
 
Trichodesmium erythraeum IMS101
hypothetical protein
rpe
 
Cyanothece sp. ATCC 51142

Gene: cce_0798: Ribulose-phosphate 3-epimerase
*
Cyanothece sp. PCC 7425

Site:
position = -14
score = 3.8639
sequence = GAGGAACTTTACCT

Gene: Cyan7425_1996: Ribulose-phosphate 3-epimerase
*
Cyanothece sp. PCC 8801

Site:
position = -275
score = 3.64426
sequence = AAGCAGCTATTCTG

Gene: PCC8801_1619: Ribulose-phosphate 3-epimerase
 
Gloeobacter violaceus PCC 7421

Gene: gll3548: Ribulose-phosphate 3-epimerase
 
Microcystis aeruginosa NIES-843

Gene: MAE_61690: Ribulose-phosphate 3-epimerase
*
Nostoc sp. PCC 7120

Site:
position = -263
score = 4.18289
sequence = AAGCATCAATACCG

Gene: alr0782: Ribulose-phosphate 3-epimerase
 
Prochlorococcus marinus str. MIT 9313

Gene: PMT0569: Ribulose-phosphate 3-epimerase
 
Synechococcus elongatus PCC 7942

Gene: Synpcc7942_0604: Ribulose-phosphate 3-epimerase
 
Synechococcus sp. JA-3-3Ab

Gene: CYA_0084: Ribulose-phosphate 3-epimerase
 
Synechococcus sp. PCC 7002

Gene: SYNPCC7002_A0324: Ribulose-phosphate 3-epimerase
 
Synechococcus sp. WH 8102

Gene: SYNW1115: Ribulose-phosphate 3-epimerase
*
Synechocystis sp. PCC 6803

Site:
position = -27
score = 3.53901
sequence = GAGTTGAAATACTT

Gene: sll0807: Ribulose-phosphate 3-epimerase
 
Thermosynechococcus elongatus BP-1

Gene: null: Ribulose-phosphate 3-epimerase
 
Trichodesmium erythraeum IMS101

Gene: Tery_2606: Ribulose-phosphate 3-epimerase
Ribulose-phosphate 3-epimerase
 
CRON 5.
chlN
*
Cyanothece sp. ATCC 51142

Site:
position = -365
score = 4.88585
sequence = AAGTAAGTTTACCT

Gene: cce_4534: Light-independent protochlorophyllide reductase subunit N
 
Cyanothece sp. PCC 7425

Gene: Cyan7425_3941: Light-independent protochlorophyllide reductase subunit N
*
Cyanothece sp. PCC 8801

Site:
position = -357
score = 4.67909
sequence = AAGCAACTTTACCT

Gene: PCC8801_0789: Light-independent protochlorophyllide reductase subunit N
 
Gloeobacter violaceus PCC 7421

Gene: gvip327: Light-independent protochlorophyllide reductase subunit N
 
Microcystis aeruginosa NIES-843

Gene: MAE_16250: Light-independent protochlorophyllide reductase subunit N
*
Nostoc sp. PCC 7120

Site:
position = -7
score = 3.7311
sequence = AAGCAAAATGACCA

Gene: all5076: Light-independent protochlorophyllide reductase subunit N
 
Prochlorococcus marinus str. MIT 9313

Gene: PMT1215: Light-independent protochlorophyllide reductase subunit N
 
Synechococcus elongatus PCC 7942

Gene: Synpcc7942_1420: Light-independent protochlorophyllide reductase subunit N
 
Synechococcus sp. JA-3-3Ab

Gene: CYA_2385: Light-independent protochlorophyllide reductase subunit N
 
Synechococcus sp. PCC 7002

Gene: SYNPCC7002_A2345: Light-independent protochlorophyllide reductase subunit N
 
Synechococcus sp. WH 8102

Gene: SYNW1723: Light-independent protochlorophyllide reductase subunit N
*
Synechocystis sp. PCC 6803

Site:
position = -242
score = 3.54388
sequence = AATTAAAATTAATC

Gene: slr0750: Light-independent protochlorophyllide reductase subunit N
 
Thermosynechococcus elongatus BP-1

Gene: null: Light-independent protochlorophyllide reductase subunit N
 
Trichodesmium erythraeum IMS101

Gene: Tery_1530: Light-independent protochlorophyllide reductase subunit N
Light-independent protochlorophyllide reductase subunit N
 
CRON 6.
ndhD
*
Cyanothece sp. ATCC 51142

Site:
position = -19
score = 4.22604
sequence = GAGTATTTATTCCT

Gene: cce_3522: NADH dehydrogenase subunit
 
Cyanothece sp. PCC 7425
 
Cyanothece sp. PCC 8801
 
Gloeobacter violaceus PCC 7421
 
Microcystis aeruginosa NIES-843
*
Nostoc sp. PCC 7120

Site:
position = -160
score = 4.22604
sequence = GAGTATTTATTCCT

Site:
position = -119
score = 4.06046
sequence = GAGTATAAATTCCT

Site:
position = -59
score = 4.31105
sequence = AAGTAACAATTCCT

Gene: alr0348: NADH dehydrogenase subunit
*
Prochlorococcus marinus str. MIT 9313

Site:
position = -155
score = 4.1608
sequence = GAGTAGATATACTC

Gene: PMT0427: NADH dehydrogenase subunit
*
Synechococcus elongatus PCC 7942

Site:
position = -42
score = 4.16807
sequence = AAGCAAATCTGCTT

Site:
position = -87
score = 4.364
sequence = GAGTATTTTTACTC

Gene: Synpcc7942_1439: NADH dehydrogenase subunit
*
Synechococcus sp. JA-3-3Ab

Site:
position = -18
score = 4.0115
sequence = GAGTATTTATTCCC

Gene: CYA_0520: NADH dehydrogenase subunit
*
Synechococcus sp. PCC 7002

Site:
position = -20
score = 4.53896
sequence = AAGTATTTTTTCCT

Gene: SYNPCC7002_A1973: NADH dehydrogenase subunit
 
Synechococcus sp. WH 8102

Gene: SYNW1482: NADH dehydrogenase subunit
 
Synechocystis sp. PCC 6803
*
Thermosynechococcus elongatus BP-1

Site:
position = -64
score = 4.39733
sequence = AGGTATATATTCTT

Gene: null: NADH dehydrogenase subunit
 
Trichodesmium erythraeum IMS101
NADH dehydrogenase subunit
 
CRON 7.
pedR
*
Cyanothece sp. ATCC 51142

Site:
position = -29
score = 4.72316
sequence = AAGTAAATGTACTA

Gene: cce_4720: Thioredoxin status sensitive transcription regulator, LuxR family
*
Cyanothece sp. PCC 7425

Site:
position = -28
score = 4.29687
sequence = AAGTAATTGTACGG

Gene: Cyan7425_0293: Thioredoxin status sensitive transcription regulator, LuxR family
*
Cyanothece sp. PCC 8801

Site:
position = -28
score = 4.72316
sequence = AAGTAAATGTACTA

Gene: PCC8801_4139: Thioredoxin status sensitive transcription regulator, LuxR family
 
Gloeobacter violaceus PCC 7421

Gene: gsl4037: Thioredoxin status sensitive transcription regulator, LuxR family
*
Microcystis aeruginosa NIES-843

Site:
position = -28
score = 4.74568
sequence = AAGTAAATATACGA

Gene: MAE_54580: Thioredoxin status sensitive transcription regulator, LuxR family
*
Nostoc sp. PCC 7120

Site:
position = -194
score = 4.48539
sequence = AAGTATATTTAATT

Site:
position = -33
score = 4.60578
sequence = AAGTACATATACCA

Gene: asl2551: Thioredoxin status sensitive transcription regulator, LuxR family
*
Prochlorococcus marinus str. MIT 9313

Site:
position = -366
score = 3.7302
sequence = AAGTAAATCTGATT

Gene: PMT2014: Thioredoxin status sensitive transcription regulator, LuxR family
*
Synechococcus elongatus PCC 7942

Site:
position = -30
score = 4.6803
sequence = AAGTACAAATACTT

Gene: Synpcc7942_2264: Thioredoxin status sensitive transcription regulator, LuxR family
 
Synechococcus sp. JA-3-3Ab

Gene: CYA_2351: Thioredoxin status sensitive transcription regulator, LuxR family
*
Synechococcus sp. PCC 7002

Site:
position = -257
score = 3.68573
sequence = AAGAAAGTTTATCT

Gene: SYNPCC7002_A0641: Thioredoxin status sensitive transcription regulator, LuxR family
 
Synechococcus sp. WH 8102

Gene: SYNW2268: Thioredoxin status sensitive transcription regulator, LuxR family
*
Synechocystis sp. PCC 6803

Site:
position = -28
score = 4.82382
sequence = GAGTAAATATACCT

Gene: ssl0564: Thioredoxin status sensitive transcription regulator, LuxR family
*
Thermosynechococcus elongatus BP-1

Site:
position = -22
score = 4.64434
sequence = AAGTAATTATACGG

Gene: null: Thioredoxin status sensitive transcription regulator, LuxR family
*
Trichodesmium erythraeum IMS101

Site:
position = -34
score = 5.16069
sequence = AAGCAAATATACTT

Gene: Tery_2735: Thioredoxin status sensitive transcription regulator, LuxR family
Thioredoxin status sensitive transcription regulator, LuxR family
 
CRON 8.
slr1957
*
Cyanothece sp. ATCC 51142

Site:
position = -166
score = 4.54905
sequence = AAGCATATCTACTT

Gene: cce_2950: Conserved hypothetical protein
*
Cyanothece sp. PCC 7425

Site:
position = -86
score = 5.09377
sequence = AAGTATTTATACCT

Gene: Cyan7425_3849: Conserved hypothetical protein
*
Cyanothece sp. PCC 8801

Site:
position = -148
score = 4.50071
sequence = AAGCAAGATTACCT

Gene: PCC8801_3714: Conserved hypothetical protein
 
Gloeobacter violaceus PCC 7421
 
Microcystis aeruginosa NIES-843

Gene: MAE_58280: Conserved hypothetical protein
*
Nostoc sp. PCC 7120

Site:
position = -157
score = 4.32523
sequence = AAGCATGAATACTA

Gene: all2740: Conserved hypothetical protein
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus elongatus PCC 7942

Gene: Synpcc7942_0215: Conserved hypothetical protein
 
Synechococcus sp. JA-3-3Ab
*
Synechococcus sp. PCC 7002

Site:
position = -217
score = 4.9886
sequence = AAGTAATTATACCC

Gene: SYNPCC7002_A1219: Conserved hypothetical protein
 
Synechococcus sp. WH 8102
*
Synechocystis sp. PCC 6803

Site:
position = -18
score = 4.77029
sequence = AAGCATAAATACCT

Gene: slr1957: Conserved hypothetical protein
 
Thermosynechococcus elongatus BP-1

Gene: null: Conserved hypothetical protein
 
Trichodesmium erythraeum IMS101
Conserved hypothetical protein
 
CRON 9.
ndhD2
 
Cyanothece sp. ATCC 51142

Gene: cce_1690: NADH dehydrogenase subunit
*
Cyanothece sp. PCC 7425

Site:
position = -110
score = 4.16904
sequence = AAGTAGGTTTACCC

Site:
position = -8
score = 4.44268
sequence = AAGTATTTATGCTC

Gene: Cyan7425_0836: NADH dehydrogenase subunit
 
Cyanothece sp. PCC 8801

Gene: PCC8801_3836: NADH dehydrogenase subunit
 
Gloeobacter violaceus PCC 7421
*
Microcystis aeruginosa NIES-843

Site:
position = -20
score = 4.20762
sequence = AGGTATTTTTTCTT

Gene: MAE_42210: NADH dehydrogenase subunit
*
Nostoc sp. PCC 7120

Site:
position = -23
score = 4.52917
sequence = AAGTATTTTTGCTT

Gene: alr5050: NADH dehydrogenase subunit
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus elongatus PCC 7942
 
Synechococcus sp. JA-3-3Ab
 
Synechococcus sp. PCC 7002

Gene: SYNPCC7002_A2327: NADH dehydrogenase subunit
 
Synechococcus sp. WH 8102
*
Synechocystis sp. PCC 6803

Site:
position = -20
score = 4.33568
sequence = AGGTATTTATTCTT

Gene: slr1291: NADH dehydrogenase subunit
 
Thermosynechococcus elongatus BP-1
*
Trichodesmium erythraeum IMS101

Site:
position = -20
score = 4.09521
sequence = AAGTATTTGTGCTC

Site:
position = -103
score = 4.70466
sequence = AAGTATATATATTT

Gene: Tery_3241: NADH dehydrogenase subunit
NADH dehydrogenase subunit
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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