Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog CcmR - Cyanobacteria

Properties
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: repressor
Biological process: Carbon dioxide fixation
Effector:
Phylum: Cyanobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 72 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Cyanothece sp. ATCC 51142 22 8
Cyanothece sp. PCC 7425 15 4
Cyanothece sp. PCC 8801 16 7
Gloeobacter violaceus PCC 7421 10 3
Microcystis aeruginosa NIES-843 14 5
Nostoc sp. PCC 7120 6 4
Prochlorococcus marinus str. MIT 9313
Synechococcus elongatus PCC 7942 6 3
Synechococcus sp. JA-3-3Ab 5 2
Synechococcus sp. PCC 7002 18 5
Synechococcus sp. WH 8102
Synechocystis sp. PCC 6803 31 8
Thermosynechococcus elongatus BP-1 12 3
Trichodesmium erythraeum IMS101
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ccmR
*
Cyanothece sp. ATCC 51142

Site:
position = -101
score = 4.83893
sequence = ATGGAAATAAGTCTAT

Site:
position = -133
score = 4.26511
sequence = ATAGATTTATTTCAAC

Gene: cce_3731: Carbon assimilation transcriptional regulator, LysR family
*
Cyanothece sp. PCC 7425

Site:
position = -93
score = 5.85786
sequence = ATAGATTTTTGTCTAT

Gene: Cyan7425_3855: Carbon assimilation transcriptional regulator, LysR family
*
Cyanothece sp. PCC 8801

Site:
position = -144
score = 4.36968
sequence = ATAGAATTTAATCAAA

Site:
position = -112
score = 4.84814
sequence = ATTGTATTTAATCTAT

Gene: PCC8801_3406: Carbon assimilation transcriptional regulator, LysR family
*
Gloeobacter violaceus PCC 7421

Site:
position = -34
score = 5.19751
sequence = ATAGAACTATGTCTAT

Gene: gll1001: Carbon assimilation transcriptional regulator, LysR family
*2
Microcystis aeruginosa NIES-843

Site:
position = -71
score = 4.89685
sequence = ATTGACTAGAATCTAT

Gene: MAE_15110: Carbon assimilation transcriptional regulator, LysR family

Site:
position = -207
score = 4.88882
sequence = ATTGTTATAAATCTAT

Site:
position = -122
score = 4.93943
sequence = ATTGATTTAAACCTAT

Site:
position = -238
score = 4.33195
sequence = ATAGACAAAACTTTAT

Gene: MAE_62070: Carbon assimilation transcriptional regulator, LysR family
*
Nostoc sp. PCC 7120

Site:
position = -146
score = 5.79201
sequence = ATAGATTTTTATCTAT

Site:
position = -72
score = 4.94318
sequence = CTAGTCTTATATCTAT

Site:
position = -285
score = 5.79201
sequence = ATAGATTTTTATCTAT

Gene: all0862: Carbon assimilation transcriptional regulator, LysR family
 
Prochlorococcus marinus str. MIT 9313
*
Synechococcus elongatus PCC 7942

Site:
position = -34
score = 5.74728
sequence = ATAGACTTAAATCTAT

Gene: Synpcc7942_1310: Carbon assimilation transcriptional regulator, LysR family
 
Synechococcus sp. JA-3-3Ab

Gene: CYA_1081: Carbon assimilation transcriptional regulator, LysR family
*
Synechococcus sp. PCC 7002

Site:
position = -63
score = 5.03591
sequence = ATTGACTCTAGTCTAT

Gene: SYNPCC7002_A0171: Carbon assimilation transcriptional regulator, LysR family
 
Synechococcus sp. WH 8102
*2
Synechocystis sp. PCC 6803

Gene: sll0030: Carbon assimilation transcriptional regulator, LysR family

Site:
position = -179
score = 4.83565
sequence = ATAGCCATAGGTCTAT

Site:
position = -240
score = 4.72861
sequence = ATTGGCTTTATTCTAT

Gene: sll1594: Carbon assimilation transcriptional regulator, LysR family
*
Thermosynechococcus elongatus BP-1

Site:
position = -42
score = 5.09796
sequence = ATAGAATTTCGTCTAT

Gene: tlr2037: Carbon assimilation transcriptional regulator, LysR family
 
Trichodesmium erythraeum IMS101
Carbon assimilation transcriptional regulator, LysR family
ndhF3
*
Cyanothece sp. ATCC 51142

Site:
position = -74
score = 5.52754
sequence = ATAGACTTAATTCTAT

Gene: cce_0603: NADH dehydrogenase subunit F
 
Cyanothece sp. PCC 7425

Gene: Cyan7425_4861: NADH dehydrogenase subunit F
*
Cyanothece sp. PCC 8801

Site:
position = -71
score = 5.5986
sequence = ATAGACTAAAGTCTAT

Site:
position = -8
score = 5.03594
sequence = ATTGTTATATGTCTAT

Gene: PCC8801_4247: NADH dehydrogenase subunit F
*
Gloeobacter violaceus PCC 7421

Site:
position = -139
score = 4.95938
sequence = ATCTACTTTTATCTAT

Gene: gvip132: NADH dehydrogenase subunit F
 
Microcystis aeruginosa NIES-843

Gene: MAE_15120: NADH dehydrogenase subunit F
*
Nostoc sp. PCC 7120

Site:
position = -245
score = 5.85786
sequence = ATAGATTTTTGTCTAT

Gene: alr4156: NADH dehydrogenase subunit F
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus elongatus PCC 7942

Gene: Synpcc7942_2091: NADH dehydrogenase subunit F
*
Synechococcus sp. JA-3-3Ab

Site:
position = -107
score = 5.03875
sequence = CTTGATTTTTGTCTAT

Gene: CYA_0640: NADH dehydrogenase subunit F
 
Synechococcus sp. PCC 7002

Gene: SYNPCC7002_A0172: NADH dehydrogenase subunit F
 
Synechococcus sp. WH 8102
*
Synechocystis sp. PCC 6803

Site:
position = -204
score = 3.87446
sequence = ATTGTCGCTTGACTAT

Gene: sll1732: NADH dehydrogenase subunit F
 
Thermosynechococcus elongatus BP-1

Gene: null: NADH dehydrogenase subunit F
 
Trichodesmium erythraeum IMS101
NADH dehydrogenase subunit F
ndhD3
 
Cyanothece sp. ATCC 51142

Gene: cce_0604: NADH dehydrogenase subunit D
 
Cyanothece sp. PCC 7425

Gene: Cyan7425_4860: NADH dehydrogenase subunit D
 
Cyanothece sp. PCC 8801

Gene: PCC8801_4249: NADH dehydrogenase subunit D
 
Gloeobacter violaceus PCC 7421

Gene: gvip133: NADH dehydrogenase subunit D
 
Microcystis aeruginosa NIES-843

Gene: MAE_15140: NADH dehydrogenase subunit D
 
Nostoc sp. PCC 7120

Gene: alr4157: NADH dehydrogenase subunit D
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus elongatus PCC 7942

Gene: Synpcc7942_2092: NADH dehydrogenase subunit D
 
Synechococcus sp. JA-3-3Ab

Gene: CYA_0639: NADH dehydrogenase subunit D
 
Synechococcus sp. PCC 7002

Gene: SYNPCC7002_A0173: NADH dehydrogenase subunit D
 
Synechococcus sp. WH 8102
 
Synechocystis sp. PCC 6803

Gene: sll1733: NADH dehydrogenase subunit D
 
Thermosynechococcus elongatus BP-1

Gene: null: NADH dehydrogenase subunit D
 
Trichodesmium erythraeum IMS101
NADH dehydrogenase subunit D
cupA
 
Cyanothece sp. ATCC 51142

Gene: cce_0605: CO2 uptake protein
 
Cyanothece sp. PCC 7425

Gene: Cyan7425_4859: CO2 uptake protein
 
Cyanothece sp. PCC 8801

Gene: PCC8801_4250: CO2 uptake protein
 
Gloeobacter violaceus PCC 7421

Gene: gvip134: CO2 uptake protein
 
Microcystis aeruginosa NIES-843

Gene: MAE_15160: CO2 uptake protein
 
Nostoc sp. PCC 7120

Gene: alr4158: CO2 uptake protein
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus elongatus PCC 7942

Gene: Synpcc7942_2093: CO2 uptake protein
 
Synechococcus sp. JA-3-3Ab

Gene: CYA_0638: CO2 uptake protein
 
Synechococcus sp. PCC 7002

Gene: SYNPCC7002_A0174: CO2 uptake protein
 
Synechococcus sp. WH 8102
 
Synechocystis sp. PCC 6803

Gene: sll1734: CO2 uptake protein
 
Thermosynechococcus elongatus BP-1

Gene: tlr0906: CO2 uptake protein
 
Trichodesmium erythraeum IMS101
CO2 uptake protein
cupS
 
Cyanothece sp. ATCC 51142

Gene: cce_1049: CO2 uptake transporter, small subunit
 
Cyanothece sp. PCC 7425

Gene: Cyan7425_4858: CO2 uptake transporter, small subunit
 
Cyanothece sp. PCC 8801

Gene: PCC8801_1006: CO2 uptake transporter, small subunit
 
Gloeobacter violaceus PCC 7421

Gene: glr1006: CO2 uptake transporter, small subunit
 
Microcystis aeruginosa NIES-843

Gene: MAE_54040: CO2 uptake transporter, small subunit
*
Nostoc sp. PCC 7120

Site:
position = 34
score = 4.41159
sequence = ATAGTTTTAAAACTCT

Gene: alr1320: CO2 uptake transporter, small subunit
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus elongatus PCC 7942

Gene: Synpcc7942_2094: CO2 uptake transporter, small subunit
 
Synechococcus sp. JA-3-3Ab

Gene: CYA_0636: CO2 uptake transporter, small subunit
 
Synechococcus sp. PCC 7002

Gene: SYNPCC7002_A0175: CO2 uptake transporter, small subunit
 
Synechococcus sp. WH 8102
 
Synechocystis sp. PCC 6803

Gene: sll1735: CO2 uptake transporter, small subunit
 
Thermosynechococcus elongatus BP-1

Gene: null: CO2 uptake transporter, small subunit
 
Trichodesmium erythraeum IMS101
CO2 uptake transporter, small subunit
ecaB2
 
Cyanothece sp. ATCC 51142

Gene: cce_0871: Periplasmic carbonic anhydrase
 
Cyanothece sp. PCC 7425
 
Cyanothece sp. PCC 8801

Gene: PCC8801_4248: Periplasmic carbonic anhydrase
 
Gloeobacter violaceus PCC 7421
 
Microcystis aeruginosa NIES-843

Gene: MAE_15130: Periplasmic carbonic anhydrase
 
Nostoc sp. PCC 7120
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus elongatus PCC 7942
 
Synechococcus sp. JA-3-3Ab
 
Synechococcus sp. PCC 7002
 
Synechococcus sp. WH 8102
 
Synechocystis sp. PCC 6803

Gene: slr0051: Periplasmic carbonic anhydrase
 
Thermosynechococcus elongatus BP-1
 
Trichodesmium erythraeum IMS101
Periplasmic carbonic anhydrase
 
CRON 2.
glpX
*
Cyanothece sp. ATCC 51142

Site:
position = -74
score = 5.00233
sequence = ATAGACTTTTGACTAA

Gene: cce_3974: Fructose-1,6-bisphosphatase II
 
Cyanothece sp. PCC 7425

Gene: Cyan7425_3502: Fructose-1,6-bisphosphatase II
*
Cyanothece sp. PCC 8801

Site:
position = -74
score = 5.00233
sequence = ATAGACTTTTGACTAA

Gene: PCC8801_3646: Fructose-1,6-bisphosphatase II
 
Gloeobacter violaceus PCC 7421

Gene: gvip460: Fructose-1,6-bisphosphatase II
*
Microcystis aeruginosa NIES-843

Site:
position = -71
score = 4.9222
sequence = ATAGACTTTTGACTGT

Gene: MAE_30020: Fructose-1,6-bisphosphatase II
 
Nostoc sp. PCC 7120

Gene: alr1041: Fructose-1,6-bisphosphatase II
 
Prochlorococcus marinus str. MIT 9313

Gene: PMT0568: Fructose-1,6-bisphosphatase II
 
Synechococcus elongatus PCC 7942

Gene: Synpcc7942_0505: Fructose-1,6-bisphosphatase II
 
Synechococcus sp. JA-3-3Ab

Gene: CYA_0542: Fructose-1,6-bisphosphatase II
 
Synechococcus sp. PCC 7002

Gene: SYNPCC7002_A1301: Fructose-1,6-bisphosphatase II
 
Synechococcus sp. WH 8102

Gene: SYNW1116: Fructose-1,6-bisphosphatase II
*
Synechocystis sp. PCC 6803

Site:
position = -71
score = 5.55243
sequence = ATAGACTTTTGACTAT

Gene: slr2094: Fructose-1,6-bisphosphatase II
 
Thermosynechococcus elongatus BP-1

Gene: null: Fructose-1,6-bisphosphatase II
 
Trichodesmium erythraeum IMS101

Gene: Tery_0948: Fructose-1,6-bisphosphatase II
Fructose-1,6-bisphosphatase II
 
CRON 3.
bicA
*2
Cyanothece sp. ATCC 51142

Site:
position = -200
score = 5.04476
sequence = ATAGAATCTAGTCTAT

Site:
position = -232
score = 4.4809
sequence = ATAGTAATTAGCCTAT

Gene: cce_1689: Bicarbonate transporter

Gene: cce_3483: Bicarbonate transporter
 
Cyanothece sp. PCC 7425

Gene: Cyan7425_1867: Bicarbonate transporter
 
Cyanothece sp. PCC 8801
 
Gloeobacter violaceus PCC 7421
 
Microcystis aeruginosa NIES-843
 
Nostoc sp. PCC 7120
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus elongatus PCC 7942
 
Synechococcus sp. JA-3-3Ab
*
Synechococcus sp. PCC 7002

Site:
position = -123
score = 5.16858
sequence = ATAGATATTAAACTAT

Gene: SYNPCC7002_A2371: Bicarbonate transporter
 
Synechococcus sp. WH 8102

Gene: SYNW1524: Bicarbonate transporter
*
Synechocystis sp. PCC 6803

Site:
position = -45
score = 5.26516
sequence = ATAGACTAAAGACTAT

Site:
position = -76
score = 4.43762
sequence = CTAGAATATTCTCTAT

Gene: sll0834: Bicarbonate transporter
 
Thermosynechococcus elongatus BP-1
 
Trichodesmium erythraeum IMS101
Bicarbonate transporter
nhaS
 
Cyanothece sp. ATCC 51142

Gene: cce_1688: Predicted sodium/hydrogen exchanger
 
Cyanothece sp. PCC 7425

Gene: Cyan7425_1868: Predicted sodium/hydrogen exchanger
 
Cyanothece sp. PCC 8801
 
Gloeobacter violaceus PCC 7421
 
Microcystis aeruginosa NIES-843

Gene: MAE_62110: Predicted sodium/hydrogen exchanger
 
Nostoc sp. PCC 7120

Gene: all1303: Predicted sodium/hydrogen exchanger
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus elongatus PCC 7942
 
Synechococcus sp. JA-3-3Ab
 
Synechococcus sp. PCC 7002

Gene: SYNPCC7002_A2372: Predicted sodium/hydrogen exchanger
 
Synechococcus sp. WH 8102
 
Synechocystis sp. PCC 6803
 
Thermosynechococcus elongatus BP-1
 
Trichodesmium erythraeum IMS101
Predicted sodium/hydrogen exchanger
mnhC
 
Cyanothece sp. ATCC 51142

Gene: cce_1686: Na/H antiporter, subunit C
*
Cyanothece sp. PCC 7425

Site:
position = -121
score = 4.67842
sequence = ATTTATAAATATCTAT

Gene: Cyan7425_3542: Na/H antiporter, subunit C
*
Cyanothece sp. PCC 8801

Site:
position = -24
score = 4.74403
sequence = ATAGTTTTTTGTATAT

Site:
position = -56
score = 4.82552
sequence = ATAGGCTTTAAGCTAT

Gene: PCC8801_2762: Na/H antiporter, subunit C
 
Gloeobacter violaceus PCC 7421
 2
Microcystis aeruginosa NIES-843

Gene: MAE_23780: Na/H antiporter, subunit C

Gene: MAE_23760: Na/H antiporter, subunit C
 
Nostoc sp. PCC 7120

Gene: all1843: Na/H antiporter, subunit C
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus elongatus PCC 7942

Gene: Synpcc7942_1474: Na/H antiporter, subunit C
 
Synechococcus sp. JA-3-3Ab

Gene: CYA_1756: Na/H antiporter, subunit C
 
Synechococcus sp. PCC 7002

Gene: SYNPCC7002_A2373: Na/H antiporter, subunit C
 
Synechococcus sp. WH 8102
*3
Synechocystis sp. PCC 6803

Gene: slr2008: Na/H antiporter, subunit C

Gene: slr2008: Na/H antiporter, subunit C

Site:
position = -125
score = 3.80851
sequence = ATAGAATCTATGCAAT

Gene: slr2006: Na/H antiporter, subunit C
*
Thermosynechococcus elongatus BP-1

Site:
position = -193
score = 4.44611
sequence = ATTGACATTGATCTAA

Site:
position = -219
score = 5.0183
sequence = ATTGATAAAAATCTAT

Gene: tll1818: Na/H antiporter, subunit C
 
Trichodesmium erythraeum IMS101

Gene: Tery_1614: Na/H antiporter, subunit C
Na/H antiporter, subunit C
mnhD
*2
Cyanothece sp. ATCC 51142

Gene: cce_1685: Na/H antiporter, subunit D

Site:
position = -180
score = 5.09829
sequence = ATTGATTTTAGGCTAT

Gene: cce_2494: Na/H antiporter, subunit D
 
Cyanothece sp. PCC 7425

Gene: Cyan7425_3543: Na/H antiporter, subunit D
 
Cyanothece sp. PCC 8801

Gene: PCC8801_2761: Na/H antiporter, subunit D
 
Gloeobacter violaceus PCC 7421
 3
Microcystis aeruginosa NIES-843

Gene: MAE_23790: Na/H antiporter, subunit D

Gene: MAE_23770: Na/H antiporter, subunit D

Gene: MAE_23750: Na/H antiporter, subunit D
 
Nostoc sp. PCC 7120

Gene: all1842: Na/H antiporter, subunit D
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus elongatus PCC 7942

Gene: Synpcc7942_1473: Na/H antiporter, subunit D
 
Synechococcus sp. JA-3-3Ab

Gene: CYA_1755: Na/H antiporter, subunit D
 2
Synechococcus sp. PCC 7002

Gene: SYNPCC7002_A2374: Na/H antiporter, subunit D

Gene: SYNPCC7002_A2375: Na/H antiporter, subunit D
 
Synechococcus sp. WH 8102
*4
Synechocystis sp. PCC 6803

Gene: slr2009: Na/H antiporter, subunit D

Site:
position = -107
score = 4.31129
sequence = ATTGTGATTGGTCTAT

Gene: slr2007: Na/H antiporter, subunit D

Gene: slr2009: Na/H antiporter, subunit D

Gene: slr2007: Na/H antiporter, subunit D
 
Thermosynechococcus elongatus BP-1

Gene: tll1817: Na/H antiporter, subunit D
 
Trichodesmium erythraeum IMS101

Gene: Tery_1615: Na/H antiporter, subunit D
Na/H antiporter, subunit D
mnhE
 
Cyanothece sp. ATCC 51142

Gene: cce_1684: Predicted Na/H antiporter, subunit E
 
Cyanothece sp. PCC 7425

Gene: Cyan7425_3544: Predicted Na/H antiporter, subunit E
 
Cyanothece sp. PCC 8801

Gene: PCC8801_2760: Predicted Na/H antiporter, subunit E
 
Gloeobacter violaceus PCC 7421
 
Microcystis aeruginosa NIES-843

Gene: MAE_23740: Predicted Na/H antiporter, subunit E
 
Nostoc sp. PCC 7120

Gene: all1841: Predicted Na/H antiporter, subunit E
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus elongatus PCC 7942

Gene: Synpcc7942_1472: Predicted Na/H antiporter, subunit E
 
Synechococcus sp. JA-3-3Ab

Gene: CYA_1754: Predicted Na/H antiporter, subunit E
 
Synechococcus sp. PCC 7002

Gene: SYNPCC7002_A2376: Predicted Na/H antiporter, subunit E
 
Synechococcus sp. WH 8102
 2
Synechocystis sp. PCC 6803

Gene: slr2010: Predicted Na/H antiporter, subunit E

Gene: slr2010: Predicted Na/H antiporter, subunit E
 
Thermosynechococcus elongatus BP-1

Gene: tll1816: Predicted Na/H antiporter, subunit E
 
Trichodesmium erythraeum IMS101

Gene: Tery_1616: Predicted Na/H antiporter, subunit E
Predicted Na/H antiporter, subunit E
mnhF
 
Cyanothece sp. ATCC 51142

Gene: cce_1683: Na/H antiporter, subunit F
 
Cyanothece sp. PCC 7425

Gene: Cyan7425_3545: Na/H antiporter, subunit F
 
Cyanothece sp. PCC 8801

Gene: PCC8801_2759: Na/H antiporter, subunit F
 
Gloeobacter violaceus PCC 7421
 
Microcystis aeruginosa NIES-843

Gene: MAE_23730: Na/H antiporter, subunit F
 
Nostoc sp. PCC 7120

Gene: asl1840: Na/H antiporter, subunit F
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus elongatus PCC 7942

Gene: Synpcc7942_1471: Na/H antiporter, subunit F
 
Synechococcus sp. JA-3-3Ab

Gene: CYA_1753: Na/H antiporter, subunit F
 
Synechococcus sp. PCC 7002

Gene: SYNPCC7002_A2377: Na/H antiporter, subunit F
 
Synechococcus sp. WH 8102
 2
Synechocystis sp. PCC 6803

Gene: ssr3409: Na/H antiporter, subunit F

Gene: ssr3409: Na/H antiporter, subunit F
 
Thermosynechococcus elongatus BP-1

Gene: tsl1815: Na/H antiporter, subunit F
 
Trichodesmium erythraeum IMS101

Gene: Tery_1617: Na/H antiporter, subunit F
Na/H antiporter, subunit F
mnhG
 
Cyanothece sp. ATCC 51142

Gene: cce_1682: Na/H antiporter, subunit G
 
Cyanothece sp. PCC 7425

Gene: Cyan7425_3546: Na/H antiporter, subunit G
 
Cyanothece sp. PCC 8801

Gene: PCC8801_2758: Na/H antiporter, subunit G
 
Gloeobacter violaceus PCC 7421
 
Microcystis aeruginosa NIES-843

Gene: MAE_23720: Na/H antiporter, subunit G
 
Nostoc sp. PCC 7120

Gene: asl1839: Na/H antiporter, subunit G
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus elongatus PCC 7942

Gene: Synpcc7942_1470: Na/H antiporter, subunit G
 
Synechococcus sp. JA-3-3Ab

Gene: CYA_1752: Na/H antiporter, subunit G
 
Synechococcus sp. PCC 7002

Gene: SYNPCC7002_A2378: Na/H antiporter, subunit G
 
Synechococcus sp. WH 8102
 2
Synechocystis sp. PCC 6803

Gene: ssr3410: Na/H antiporter, subunit G

Gene: ssr3410: Na/H antiporter, subunit G
 
Thermosynechococcus elongatus BP-1

Gene: tsl1814: Na/H antiporter, subunit G
 
Trichodesmium erythraeum IMS101

Gene: Tery_1618: Na/H antiporter, subunit G
Na/H antiporter, subunit G
slr2011
 
Cyanothece sp. ATCC 51142

Gene: cce_1681: Predicted subunit of the Na/H antiporter
 
Cyanothece sp. PCC 7425

Gene: Cyan7425_3547: Predicted subunit of the Na/H antiporter
 
Cyanothece sp. PCC 8801

Gene: PCC8801_2757: Predicted subunit of the Na/H antiporter
 
Gloeobacter violaceus PCC 7421
 
Microcystis aeruginosa NIES-843

Gene: MAE_23710: Predicted subunit of the Na/H antiporter
 
Nostoc sp. PCC 7120

Gene: all1838: Predicted subunit of the Na/H antiporter
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus elongatus PCC 7942

Gene: Synpcc7942_1469: Predicted subunit of the Na/H antiporter
 
Synechococcus sp. JA-3-3Ab

Gene: CYA_1751: Predicted subunit of the Na/H antiporter
 
Synechococcus sp. PCC 7002

Gene: SYNPCC7002_A2379: Predicted subunit of the Na/H antiporter
 
Synechococcus sp. WH 8102
 2
Synechocystis sp. PCC 6803

Gene: slr2011: Predicted subunit of the Na/H antiporter

Gene: slr2011: Predicted subunit of the Na/H antiporter
 
Thermosynechococcus elongatus BP-1

Gene: tll1813: Predicted subunit of the Na/H antiporter
 
Trichodesmium erythraeum IMS101

Gene: Tery_1619: Predicted subunit of the Na/H antiporter
Predicted subunit of the Na/H antiporter
mnhB
 
Cyanothece sp. ATCC 51142

Gene: cce_1680: Na/H antiporter, subunit B
 
Cyanothece sp. PCC 7425

Gene: Cyan7425_3548: Na/H antiporter, subunit B
 
Cyanothece sp. PCC 8801

Gene: PCC8801_2756: Na/H antiporter, subunit B
 
Gloeobacter violaceus PCC 7421
 
Microcystis aeruginosa NIES-843

Gene: MAE_23700: Na/H antiporter, subunit B
 
Nostoc sp. PCC 7120

Gene: all1837: Na/H antiporter, subunit B
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus elongatus PCC 7942

Gene: Synpcc7942_1468: Na/H antiporter, subunit B
 
Synechococcus sp. JA-3-3Ab

Gene: CYA_1750: Na/H antiporter, subunit B
 
Synechococcus sp. PCC 7002

Gene: SYNPCC7002_A2380: Na/H antiporter, subunit B
 
Synechococcus sp. WH 8102
 2
Synechocystis sp. PCC 6803

Gene: slr2012: Na/H antiporter, subunit B

Gene: slr2012: Na/H antiporter, subunit B
 
Thermosynechococcus elongatus BP-1

Gene: tll1812: Na/H antiporter, subunit B
 
Trichodesmium erythraeum IMS101

Gene: Tery_1620: Na/H antiporter, subunit B
Na/H antiporter, subunit B
cce_1687
 
Cyanothece sp. ATCC 51142

Gene: cce_1687: Predicted membrane protein (COG3431)
 2
Cyanothece sp. PCC 7425

Gene: Cyan7425_4185: Predicted membrane protein (COG3431)

Gene: Cyan7425_4921: Predicted membrane protein (COG3431)
*
Cyanothece sp. PCC 8801

Site:
position = -46
score = 5.19807
sequence = ATAGCTTTTAATCTAT

Site:
position = -14
score = 4.1606
sequence = ATAGAATAAATACAAT

Gene: PCC8801_1398: Predicted membrane protein (COG3431)
 
Gloeobacter violaceus PCC 7421
 
Microcystis aeruginosa NIES-843

Gene: MAE_20040: Predicted membrane protein (COG3431)
 
Nostoc sp. PCC 7120

Gene: alr0613: Predicted membrane protein (COG3431)
 
Prochlorococcus marinus str. MIT 9313

Gene: PMT0460: Predicted membrane protein (COG3431)
 
Synechococcus elongatus PCC 7942

Gene: Synpcc7942_2327: Predicted membrane protein (COG3431)
 
Synechococcus sp. JA-3-3Ab

Gene: CYA_1481: Predicted membrane protein (COG3431)
 
Synechococcus sp. PCC 7002

Gene: SYNPCC7002_A2582: Predicted membrane protein (COG3431)
 
Synechococcus sp. WH 8102

Gene: SYNW1513: Predicted membrane protein (COG3431)
 
Synechocystis sp. PCC 6803
 
Thermosynechococcus elongatus BP-1

Gene: tlr2434: Predicted membrane protein (COG3431)
 
Trichodesmium erythraeum IMS101
Predicted membrane protein (COG3431)
cmpA
*
Cyanothece sp. ATCC 51142

Site:
position = -299
score = 4.8752
sequence = ATAGATAAATACCTAT

Gene: cce_0305: Bicarbontate ABC transporter, substrate-binding protein
*
Cyanothece sp. PCC 7425

Site:
position = -286
score = 5.15647
sequence = ATAGACTTAGGGCTAT

Gene: Cyan7425_4925: Bicarbontate ABC transporter, substrate-binding protein
*
Cyanothece sp. PCC 8801

Site:
position = -268
score = 4.49863
sequence = ATACATATTAAGCTAT

Gene: PCC8801_3521: Bicarbontate ABC transporter, substrate-binding protein
*
Gloeobacter violaceus PCC 7421

Site:
position = -136
score = 5.0229
sequence = ATCGACTTTTCTCTAT

Site:
position = -168
score = 5.58602
sequence = ATAGATTAATATCTAT

Gene: gvip279: Bicarbontate ABC transporter, substrate-binding protein
*
Microcystis aeruginosa NIES-843

Site:
position = -104
score = 4.6449
sequence = ATAGCTAAATTTCTAT

Gene: MAE_19990: Bicarbontate ABC transporter, substrate-binding protein
 
Nostoc sp. PCC 7120

Gene: alr2877: Bicarbontate ABC transporter, substrate-binding protein
 
Prochlorococcus marinus str. MIT 9313
*
Synechococcus elongatus PCC 7942

Site:
position = -186
score = 4.85582
sequence = ATTGACTTAGCTCTAT

Gene: Synpcc7942_1488: Bicarbontate ABC transporter, substrate-binding protein
*
Synechococcus sp. JA-3-3Ab

Site:
position = -185
score = 4.21119
sequence = ATAAACGGAAGTCTAT

Site:
position = -153
score = 4.36003
sequence = ATTGTATTGTTTCTAT

Gene: CYA_0894: Bicarbontate ABC transporter, substrate-binding protein
 
Synechococcus sp. PCC 7002
 
Synechococcus sp. WH 8102
*
Synechocystis sp. PCC 6803

Site:
position = -208
score = 4.54532
sequence = TTGGATATTTATCTAT

Gene: slr0040: Bicarbontate ABC transporter, substrate-binding protein
*
Thermosynechococcus elongatus BP-1

Site:
position = -124
score = 4.05052
sequence = ATAGATTGTTTGCAAT

Gene: null: Bicarbontate ABC transporter, substrate-binding protein
 
Trichodesmium erythraeum IMS101
Bicarbontate ABC transporter, substrate-binding protein
cmpB
 
Cyanothece sp. ATCC 51142

Gene: cce_0304: Bicarbontate ABC transporter, permease protein
 
Cyanothece sp. PCC 7425

Gene: Cyan7425_4924: Bicarbontate ABC transporter, permease protein
 
Cyanothece sp. PCC 8801

Gene: PCC8801_3520: Bicarbontate ABC transporter, permease protein
 
Gloeobacter violaceus PCC 7421

Gene: gvip280: Bicarbontate ABC transporter, permease protein
 
Microcystis aeruginosa NIES-843

Gene: MAE_20000: Bicarbontate ABC transporter, permease protein
 
Nostoc sp. PCC 7120

Gene: alr2878: Bicarbontate ABC transporter, permease protein
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus elongatus PCC 7942

Gene: Synpcc7942_1489: Bicarbontate ABC transporter, permease protein
 
Synechococcus sp. JA-3-3Ab

Gene: CYA_0893: Bicarbontate ABC transporter, permease protein
 
Synechococcus sp. PCC 7002
 
Synechococcus sp. WH 8102
 
Synechocystis sp. PCC 6803

Gene: slr0041: Bicarbontate ABC transporter, permease protein
 
Thermosynechococcus elongatus BP-1

Gene: null: Bicarbontate ABC transporter, permease protein
 
Trichodesmium erythraeum IMS101
Bicarbontate ABC transporter, permease protein
porB
 
Cyanothece sp. ATCC 51142
 
Cyanothece sp. PCC 7425

Gene: Cyan7425_2214: Low-CO2 inducible, outer membrane bicarbonate porin
 
Cyanothece sp. PCC 8801
 
Gloeobacter violaceus PCC 7421
 
Microcystis aeruginosa NIES-843
 
Nostoc sp. PCC 7120
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus elongatus PCC 7942
 
Synechococcus sp. JA-3-3Ab
*
Synechococcus sp. PCC 7002

Site:
position = -294
score = 4.35588
sequence = ATAGTCGAAAGACTAT

Gene: SYNPCC7002_G0011: Low-CO2 inducible, outer membrane bicarbonate porin
 
Synechococcus sp. WH 8102
 
Synechocystis sp. PCC 6803

Gene: slr0042: Low-CO2 inducible, outer membrane bicarbonate porin
 
Thermosynechococcus elongatus BP-1
 
Trichodesmium erythraeum IMS101
Low-CO2 inducible, outer membrane bicarbonate porin
cmpC
 
Cyanothece sp. ATCC 51142

Gene: cce_0303: Bicarbontate ABC transporter, ATP-binding protein 1
 
Cyanothece sp. PCC 7425

Gene: Cyan7425_4923: Bicarbontate ABC transporter, ATP-binding protein 1
 
Cyanothece sp. PCC 8801

Gene: PCC8801_3519: Bicarbontate ABC transporter, ATP-binding protein 1
 
Gloeobacter violaceus PCC 7421

Gene: gvip282: Bicarbontate ABC transporter, ATP-binding protein 1
 
Microcystis aeruginosa NIES-843

Gene: MAE_20010: Bicarbontate ABC transporter, ATP-binding protein 1
 
Nostoc sp. PCC 7120

Gene: alr2879: Bicarbontate ABC transporter, ATP-binding protein 1
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus elongatus PCC 7942

Gene: Synpcc7942_1490: Bicarbontate ABC transporter, ATP-binding protein 1
 
Synechococcus sp. JA-3-3Ab

Gene: CYA_0892: Bicarbontate ABC transporter, ATP-binding protein 1
 
Synechococcus sp. PCC 7002
 
Synechococcus sp. WH 8102
 
Synechocystis sp. PCC 6803

Gene: slr0043: Bicarbontate ABC transporter, ATP-binding protein 1
 
Thermosynechococcus elongatus BP-1

Gene: null: Bicarbontate ABC transporter, ATP-binding protein 1
 
Trichodesmium erythraeum IMS101
Bicarbontate ABC transporter, ATP-binding protein 1
cmpD
 
Cyanothece sp. ATCC 51142

Gene: cce_0302: Bicarbontate ABC transporter, ATP-binding protein 2
 
Cyanothece sp. PCC 7425

Gene: Cyan7425_4922: Bicarbontate ABC transporter, ATP-binding protein 2
 
Cyanothece sp. PCC 8801

Gene: PCC8801_3518: Bicarbontate ABC transporter, ATP-binding protein 2
 
Gloeobacter violaceus PCC 7421

Gene: gvip283: Bicarbontate ABC transporter, ATP-binding protein 2
 
Microcystis aeruginosa NIES-843

Gene: MAE_20020: Bicarbontate ABC transporter, ATP-binding protein 2
 
Nostoc sp. PCC 7120

Gene: alr2880: Bicarbontate ABC transporter, ATP-binding protein 2
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus elongatus PCC 7942

Gene: Synpcc7942_1491: Bicarbontate ABC transporter, ATP-binding protein 2
 
Synechococcus sp. JA-3-3Ab

Gene: CYA_0891: Bicarbontate ABC transporter, ATP-binding protein 2
 
Synechococcus sp. PCC 7002
 
Synechococcus sp. WH 8102
 
Synechocystis sp. PCC 6803

Gene: slr0044: Bicarbontate ABC transporter, ATP-binding protein 2
 
Thermosynechococcus elongatus BP-1

Gene: null: Bicarbontate ABC transporter, ATP-binding protein 2
 
Trichodesmium erythraeum IMS101
Bicarbontate ABC transporter, ATP-binding protein 2
ecaB
 
Cyanothece sp. ATCC 51142
 
Cyanothece sp. PCC 7425
 
Cyanothece sp. PCC 8801
 2
Gloeobacter violaceus PCC 7421

Gene: glr0945: Periplasmic carbonic anhydrase

Gene: gvip281: Periplasmic carbonic anhydrase
 
Microcystis aeruginosa NIES-843
 
Nostoc sp. PCC 7120
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus elongatus PCC 7942
 
Synechococcus sp. JA-3-3Ab
 
Synechococcus sp. PCC 7002
 
Synechococcus sp. WH 8102
 
Synechocystis sp. PCC 6803
 
Thermosynechococcus elongatus BP-1
 
Trichodesmium erythraeum IMS101
Periplasmic carbonic anhydrase
Synpcc7942_2328
 
Cyanothece sp. ATCC 51142
 
Cyanothece sp. PCC 7425
 
Cyanothece sp. PCC 8801
 
Gloeobacter violaceus PCC 7421
*
Microcystis aeruginosa NIES-843

Site:
position = -80
score = 5.01353
sequence = ATAAAGTTTTGTCTAT

Site:
position = -111
score = 4.917
sequence = ATAGATTTATAACAAT

Site:
position = -196
score = 4.6565
sequence = ATAGGTTTAAATCAAT

Gene: MAE_62080: Predicted permease
 
Nostoc sp. PCC 7120
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus elongatus PCC 7942
 
Synechococcus sp. JA-3-3Ab
 
Synechococcus sp. PCC 7002
 
Synechococcus sp. WH 8102
 
Synechocystis sp. PCC 6803
 
Thermosynechococcus elongatus BP-1
 
Trichodesmium erythraeum IMS101
Predicted permease
sbtA
*
Cyanothece sp. ATCC 51142

Site:
position = -181
score = 4.03161
sequence = ATAGATCGATATATAT

Gene: cce_2939: High-affinity, low-flux sodium dependent bicarbonate transporter
*
Cyanothece sp. PCC 7425

Site:
position = -94
score = 4.22612
sequence = TTTTACCTATGTCTAT

Gene: Cyan7425_5063: High-affinity, low-flux sodium dependent bicarbonate transporter
*
Cyanothece sp. PCC 8801

Site:
position = -174
score = 5.44315
sequence = ATAGATAAATGTCTAT

Gene: PCC8801_1249: High-affinity, low-flux sodium dependent bicarbonate transporter
 
Gloeobacter violaceus PCC 7421
 
Microcystis aeruginosa NIES-843

Gene: MAE_62090: High-affinity, low-flux sodium dependent bicarbonate transporter
*
Nostoc sp. PCC 7120

Site:
position = -191
score = 4.58621
sequence = ATAGAATTTTGGCTCT

Site:
position = -173
score = 4.78035
sequence = ATAAATATTGATCTAT

Gene: all2134: High-affinity, low-flux sodium dependent bicarbonate transporter
 
Prochlorococcus marinus str. MIT 9313
*
Synechococcus elongatus PCC 7942

Site:
position = -207
score = 4.60931
sequence = ATAGACAGGAATCTAT

Gene: Synpcc7942_1475: High-affinity, low-flux sodium dependent bicarbonate transporter
 
Synechococcus sp. JA-3-3Ab
*
Synechococcus sp. PCC 7002

Site:
position = -134
score = 4.9125
sequence = ATAGAGCTAAATCTAT

Gene: SYNPCC7002_A0470: High-affinity, low-flux sodium dependent bicarbonate transporter
 
Synechococcus sp. WH 8102
*
Synechocystis sp. PCC 6803

Site:
position = -182
score = 4.66804
sequence = ATAGACTTTAGCTTAT

Site:
position = -136
score = 5.03171
sequence = ATAGACAAGAGTCTAT

Gene: slr1512: High-affinity, low-flux sodium dependent bicarbonate transporter
 
Thermosynechococcus elongatus BP-1
 
Trichodesmium erythraeum IMS101
High-affinity, low-flux sodium dependent bicarbonate transporter
sbtB
*
Cyanothece sp. ATCC 51142

Site:
position = -52
score = 4.54216
sequence = ATAGATTTTTGTCTTA

Gene: cce_2937: Predicted membrane protein
 
Cyanothece sp. PCC 7425

Gene: Cyan7425_5062: Predicted membrane protein
 
Cyanothece sp. PCC 8801

Gene: PCC8801_1248: Predicted membrane protein
 
Gloeobacter violaceus PCC 7421
 
Microcystis aeruginosa NIES-843

Gene: MAE_62100: Predicted membrane protein
 
Nostoc sp. PCC 7120

Gene: all2133: Predicted membrane protein
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus elongatus PCC 7942

Gene: Synpcc7942_1476: Predicted membrane protein
 
Synechococcus sp. JA-3-3Ab
*
Synechococcus sp. PCC 7002

Site:
position = -131
score = 4.5769
sequence = ATAGACTTAAAGATAT

Site:
position = -99
score = 4.22255
sequence = ATAGAGTCTTGTCTTT

Gene: SYNPCC7002_A0472: Predicted membrane protein
 
Synechococcus sp. WH 8102
 
Synechocystis sp. PCC 6803

Gene: slr1513: Predicted membrane protein
 
Thermosynechococcus elongatus BP-1
 
Trichodesmium erythraeum IMS101
Predicted membrane protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD