Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog SinR - Bacillales

Properties
Regulator type: Transcription factor
Regulator family: XRE
Regulation mode: repressor
Biological process: Biofilm formation
Effector: SinI, antirepressor protein
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 15 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Anoxybacillus flavithermus WK1
Bacillus amyloliquefaciens FZB42 19 3
Bacillus cereus ATCC 14579 2 1
Bacillus clausii KSM-K16
Bacillus halodurans C-125 2 1
Bacillus licheniformis DSM 13 19 3
Bacillus pumilus SAFR-032 17 3
Bacillus subtilis subsp. subtilis str. 168 19 3
Geobacillus kaustophilus HTA426
Oceanobacillus iheyensis HTE831 2 1
Paenibacillus sp. JDR-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
epsA
 
Anoxybacillus flavithermus WK1
*
Bacillus amyloliquefaciens FZB42

Site:
position = -125
score = 6.26612
sequence = GTTCTTTAAAAAGAAC

Gene: RBAM_031670: Possible capsular polysaccharide biosynthesis protein
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
*
Bacillus licheniformis DSM 13

Site:
position = -106
score = 6.13462
sequence = GTTCTCTAAAAAGAAC

Gene: BLi03694: Possible capsular polysaccharide biosynthesis protein
*
Bacillus pumilus SAFR-032

Site:
position = -125
score = 6.26612
sequence = GTTCTTTAAAAAGAAC

Gene: BPUM_3083: Possible capsular polysaccharide biosynthesis protein
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -127
score = 6.00313
sequence = GTTCTCTAAAGAGAAC

Gene: BSU34370: Possible capsular polysaccharide biosynthesis protein
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Possible capsular polysaccharide biosynthesis protein
epsB
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_031660: Capsular polysaccharide biosynthesis protein
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13

Gene: BLi03693: Capsular polysaccharide biosynthesis protein
 
Bacillus pumilus SAFR-032

Gene: BPUM_3082: Capsular polysaccharide biosynthesis protein
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU34360: Capsular polysaccharide biosynthesis protein
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Capsular polysaccharide biosynthesis protein
epsC
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_031650: Capsular polysaccharide biosynthesis protein
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13

Gene: BLi03692: Capsular polysaccharide biosynthesis protein
 
Bacillus pumilus SAFR-032

Gene: BPUM_3081: Capsular polysaccharide biosynthesis protein
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU34350: Capsular polysaccharide biosynthesis protein
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Capsular polysaccharide biosynthesis protein
epsD
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_031640: Putative glycosyltransferase
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13

Gene: BLi03691: Putative glycosyltransferase
 
Bacillus pumilus SAFR-032

Gene: BPUM_3080: Putative glycosyltransferase
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU34340: Putative glycosyltransferase
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Putative glycosyltransferase
epsE
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_031630: Family II glycosyltransferase/flagellar clutch
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13

Gene: BLi03690: Family II glycosyltransferase/flagellar clutch
 
Bacillus pumilus SAFR-032

Gene: BPUM_3079: Family II glycosyltransferase/flagellar clutch
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU34330: Family II glycosyltransferase/flagellar clutch
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Family II glycosyltransferase/flagellar clutch
epsF
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_031620: Putative glycosyltransferase
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13

Gene: BLi03689: Putative glycosyltransferase
 
Bacillus pumilus SAFR-032

Gene: BPUM_3078: Putative glycosyltransferase
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU34320: Putative glycosyltransferase
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_0356: Putative glycosyltransferase
Putative glycosyltransferase
epsG
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_031610: Putative transmembrane protein
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13

Gene: BLi03688: Putative transmembrane protein
 
Bacillus pumilus SAFR-032

Gene: BPUM_3077: Putative transmembrane protein
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU34310: Putative transmembrane protein
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Putative transmembrane protein
epsH
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_031600: Glycosyltransferase
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13

Gene: BLi03687: Glycosyltransferase
 
Bacillus pumilus SAFR-032

Gene: BPUM_3076: Glycosyltransferase
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU34300: Glycosyltransferase
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Glycosyltransferase
epsI
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_031590: Putative pyruvyl transferase
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13

Gene: BLi03686: Putative pyruvyl transferase
 
Bacillus pumilus SAFR-032

Gene: BPUM_3075: Putative pyruvyl transferase
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU34290: Putative pyruvyl transferase
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Putative pyruvyl transferase
epsJ
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_031580: Putative glycosyltransferase involved in pellicle formation
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13

Gene: BLi03685: Putative glycosyltransferase involved in pellicle formation
 
Bacillus pumilus SAFR-032
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU34280: Putative glycosyltransferase involved in pellicle formation
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Putative glycosyltransferase involved in pellicle formation
epsK
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_031570: Uncharacterized membrane protein
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13

Gene: BLi03684: Uncharacterized membrane protein
 
Bacillus pumilus SAFR-032

Gene: BPUM_3074: Uncharacterized membrane protein
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU34265: Uncharacterized membrane protein
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Uncharacterized membrane protein
epsL
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_031560: Sugar transferase
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13

Gene: BLi03683: Sugar transferase
 
Bacillus pumilus SAFR-032

Gene: BPUM_3073: Sugar transferase
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU34250: Sugar transferase
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831

Gene: OB2892: Sugar transferase
 
Paenibacillus sp. JDR-2
Sugar transferase
epsM
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_031550: Putative O-acetyltransferase involved in pellicle formation
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13

Gene: BLi03682: Putative O-acetyltransferase involved in pellicle formation
 
Bacillus pumilus SAFR-032

Gene: BPUM_3072: Putative O-acetyltransferase involved in pellicle formation
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU34240: Putative O-acetyltransferase involved in pellicle formation
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_0362: Putative O-acetyltransferase involved in pellicle formation
Putative O-acetyltransferase involved in pellicle formation
epsN
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_031540: Putative pyridoxal phosphate-dependent aminotransferase
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13

Gene: BLi03681: Putative pyridoxal phosphate-dependent aminotransferase
 
Bacillus pumilus SAFR-032

Gene: BPUM_3071: Putative pyridoxal phosphate-dependent aminotransferase
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU34230: Putative pyridoxal phosphate-dependent aminotransferase
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831

Gene: OB2893: Putative pyridoxal phosphate-dependent aminotransferase
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_0363: Putative pyridoxal phosphate-dependent aminotransferase
Putative pyridoxal phosphate-dependent aminotransferase
epsO
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_031530: Putative pyruvyl transferase
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13

Gene: BLi03680: Putative pyruvyl transferase
 
Bacillus pumilus SAFR-032
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU34220: Putative pyruvyl transferase
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Putative pyruvyl transferase
 
CRON 2.
slr
 
Anoxybacillus flavithermus WK1
*
Bacillus amyloliquefaciens FZB42

Site:
position = -135
score = 6.26612
sequence = GTTCTTTTTAAAGAAC

Gene: RBAM_031680: Transcriptional repressor of cell separation and motility/antirepressor of SinR
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
*
Bacillus licheniformis DSM 13

Site:
position = -145
score = 6.13462
sequence = GTTCTTTTTAGAGAAC

Gene: BLi03695: Transcriptional repressor of cell separation and motility/antirepressor of SinR
*
Bacillus pumilus SAFR-032

Site:
position = -148
score = 6.26612
sequence = GTTCTTTTTAAAGAAC

Gene: BPUM_3084: Transcriptional repressor of cell separation and motility/antirepressor of SinR
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -134
score = 6.00313
sequence = GTTCTCTTTAGAGAAC

Gene: BSU34380: Transcriptional repressor of cell separation and motility/antirepressor of SinR
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Transcriptional repressor of cell separation and motility/antirepressor of SinR
 
CRON 3.
yqxM
 
Anoxybacillus flavithermus WK1
*
Bacillus amyloliquefaciens FZB42

Site:
position = -55
score = 6.13462
sequence = GTTCTTTAAAGAGAAC

Gene: RBAM_022960: Lipoprotein for biofilm formation
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
*
Bacillus halodurans C-125

Site:
position = -131
score = 5.66661
sequence = GTTCTTTATAAAAAAC

Gene: BH2131: Lipoprotein for biofilm formation
*
Bacillus licheniformis DSM 13

Site:
position = -55
score = 5.85493
sequence = GTTCTTTAAAACGAAC

Gene: BLi02639: Lipoprotein for biofilm formation
*
Bacillus pumilus SAFR-032

Site:
position = -41
score = 6.26612
sequence = GTTCTTTTTAAAGAAC

Gene: BPUM_2196: Lipoprotein for biofilm formation
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -57
score = 6.13462
sequence = GTTCTTTAAAGAGAAC

Gene: BSU24640: Lipoprotein for biofilm formation
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831

Gene: OB2527: Lipoprotein for biofilm formation
 
Paenibacillus sp. JDR-2
Lipoprotein for biofilm formation
sipW
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_022950: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion
*
Bacillus cereus ATCC 14579

Site:
position = -71
score = 5.67783
sequence = GTTCTTGTTAAAGAAC

Gene: BC1278: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion
 
Bacillus clausii KSM-K16

Gene: ABC0753: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion
 
Bacillus halodurans C-125

Gene: BH2130: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion
 
Bacillus licheniformis DSM 13

Gene: BLi02638: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion
 
Bacillus pumilus SAFR-032

Gene: BPUM_2195: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU24630: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion
 
Geobacillus kaustophilus HTA426
 3
Oceanobacillus iheyensis HTE831

Gene: OB1301: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion

Gene: OB2526: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion

Gene: OB0800: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion
 
Paenibacillus sp. JDR-2
Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion
tasA
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_022940: Stationary phase secreted protein TasA, major protein component of biofilm matrix
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13

Gene: BLi02637: Stationary phase secreted protein TasA, major protein component of biofilm matrix
 
Bacillus pumilus SAFR-032

Gene: BPUM_2194: Stationary phase secreted protein TasA, major protein component of biofilm matrix
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU24620: Stationary phase secreted protein TasA, major protein component of biofilm matrix
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831

Gene: OB2528: Stationary phase secreted protein TasA, major protein component of biofilm matrix
 
Paenibacillus sp. JDR-2
Stationary phase secreted protein TasA, major protein component of biofilm matrix
cotN
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42
 
Bacillus cereus ATCC 14579

Gene: BC1279: Secreted and spore coat-associated protein 3, similar to biofilm matrix component TasA and to camelysin
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13
 
Bacillus pumilus SAFR-032
 
Bacillus subtilis subsp. subtilis str. 168
 
Geobacillus kaustophilus HTA426
*3
Oceanobacillus iheyensis HTE831

Site:
position = -186
score = 6.26612
sequence = GTTCTTTATAAAGAAC

Gene: OB2529: Secreted and spore coat-associated protein 3, similar to biofilm matrix component TasA and to camelysin

Gene: OB0801: Secreted and spore coat-associated protein 3, similar to biofilm matrix component TasA and to camelysin

Gene: OB1302: Secreted and spore coat-associated protein 3, similar to biofilm matrix component TasA and to camelysin
 
Paenibacillus sp. JDR-2
Secreted and spore coat-associated protein 3, similar to biofilm matrix component TasA and to camelysin
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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