Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog YtcD - Bacillales

Properties
Regulator type: Transcription factor
Regulator family: HxlR
Regulation mode: activator
Biological process:
Effector:
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 10 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 3 2
Bacillus amyloliquefaciens FZB42 3 2
Bacillus pumilus SAFR-032 3 2
Bacillus licheniformis DSM 13 4 2
Anoxybacillus flavithermus WK1
Geobacillus kaustophilus HTA426
Bacillus cereus ATCC 14579
Bacillus halodurans C-125
Bacillus clausii KSM-K16
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2 3 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ytbD
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -138
score = 5.98322
sequence = CAAAGTACGTACTTTT

Gene: BSU29040: Putative transporter, MFS family
*
Bacillus amyloliquefaciens FZB42

Site:
position = -135
score = 6.0638
sequence = AAAAGTACGTTCTTTT

Gene: RBAM_026080: Putative transporter, MFS family
*
Bacillus pumilus SAFR-032

Site:
position = -101
score = 6.34764
sequence = AAAAGTACGTACTTTT

Gene: BPUM_2663: Putative transporter, MFS family
*
Bacillus licheniformis DSM 13

Site:
position = -24
score = 6.0638
sequence = AAAAGTGCGTACTTTT

Gene: BLi02839: Putative transporter, MFS family
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
*
Paenibacillus sp. JDR-2

Site:
position = -92
score = 5.11188
sequence = AATAGTGCGTACTAGT

Gene: Pjdr2_0322: Putative transporter, MFS family
Putative transporter, MFS family
ytbE
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU29050: Putative aldo/keto reductase
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_026090: Putative aldo/keto reductase
 
Bacillus pumilus SAFR-032

Gene: BPUM_2664: Putative aldo/keto reductase
 
Bacillus licheniformis DSM 13

Gene: BLi02838: Putative aldo/keto reductase
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_0321: Putative aldo/keto reductase
Putative aldo/keto reductase
 
CRON 2.
ytcD
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -61
score = 5.98322
sequence = AAAAGTACGTACTTTG

Gene: BSU29030: Transcriptional regulator, HxlR family
*
Bacillus amyloliquefaciens FZB42

Site:
position = -64
score = 6.0638
sequence = AAAAGAACGTACTTTT

Gene: RBAM_026070: Transcriptional regulator, HxlR family
*
Bacillus pumilus SAFR-032

Site:
position = -37
score = 6.34764
sequence = AAAAGTACGTACTTTT

Gene: BPUM_2662: Transcriptional regulator, HxlR family
*
Bacillus licheniformis DSM 13

Site:
position = -79
score = 6.0638
sequence = AAAAGTACGCACTTTT

Gene: BLi02840: Transcriptional regulator, HxlR family
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
*
Paenibacillus sp. JDR-2

Site:
position = -82
score = 5.11188
sequence = ACTAGTACGCACTATT

Gene: Pjdr2_0323: Transcriptional regulator, HxlR family
Transcriptional regulator, HxlR family
BLi02841
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032

Gene: BPUM_2644: Alpha-aspartyl dipeptidase Peptidase E (EC 3.4.13.21)
 
Bacillus licheniformis DSM 13

Gene: BLi02841: Alpha-aspartyl dipeptidase Peptidase E (EC 3.4.13.21)
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Alpha-aspartyl dipeptidase Peptidase E (EC 3.4.13.21)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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