Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Ddes_1411/Ddes_2092 - Desulfovibrionales

Properties
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/delta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Desulfovibrio vulgaris Hildenborough
Desulfovibrio vulgaris str. Miyazaki F
Desulfovibrio desulfuricans G20
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 8 6
Desulfovibrio piger ATCC 29098
Desulfovibrio salexigens DSM 2638
Desulfovibrio magneticus RS-1
Lawsonia intracellularis PHE/MN1-00
Desulfomicrobium baculatum DSM 4028
Desulfohalobium retbaense DSM 5692
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
Ddes_1413
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Desulfovibrio desulfuricans G20
*
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Site:
position = -227
score = 5.69
sequence = TTGTTGTTGGTGCAACAT

Site:
position = -101
score = 5.96
sequence = ATGTTGCATGGGCAACAA

Gene: Ddes_1413: hypothetical protein
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio magneticus RS-1
 2
Lawsonia intracellularis PHE/MN1-00

Gene: LI0172: hypothetical protein

Gene: LI0461: hypothetical protein
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
hypothetical protein
 
CRON 2.
Ddes_2093
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Desulfovibrio desulfuricans G20
*2
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Site:
position = -128
score = 5.72724
sequence = TTGTTGCAATGACAACAT

Gene: Ddes_1412: hypothetical protein

Site:
position = -129
score = 5.65182
sequence = ATGTTGCATACGGAACAC

Gene: Ddes_2093: hypothetical protein
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
hypothetical protein
Dde_1204
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Desulfovibrio desulfuricans G20

Gene: Dde_1204: sodium/dicarboxylate or sulfate cotransporter
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_2094: sodium/dicarboxylate or sulfate cotransporter
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_02114: sodium/dicarboxylate or sulfate cotransporter
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_0407: sodium/dicarboxylate or sulfate cotransporter
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
sodium/dicarboxylate or sulfate cotransporter
Ddes_2095
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_2095: hypothetical protein
 3
Desulfovibrio piger ATCC 29098

Gene: DESPIG_02593: hypothetical protein

Gene: DESPIG_00992: hypothetical protein

Gene: DESPIG_00665: hypothetical protein
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
hypothetical protein
 
CRON 3.
Ddes_1414
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Desulfovibrio desulfuricans G20
*
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Site:
position = -125
score = 5.69766
sequence = ATGTTGCACCAACAACAA

Gene: Ddes_1414: major facilitator superfamily MFS_1
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
major facilitator superfamily MFS_1
 
CRON 4.
Ddes_1411/Ddes_2092
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU0379: transcriptional regulator, Crp/Fnr family
 
Desulfovibrio vulgaris str. Miyazaki F
 
Desulfovibrio desulfuricans G20

Gene: Dde_0463: transcriptional regulator, Crp/Fnr family
*2
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Site:
position = -97
score = 5.37949
sequence = GTGTTCCGTATGCAACAT

Gene: Ddes_2092: transcriptional regulator, Crp/Fnr family

Site:
position = -39
score = 4.68737
sequence = ATGTTGCAACAGCATGAA

Site:
position = -189
score = 5.6377
sequence = ATGTTGTCATTGCAACAA

Gene: Ddes_1411: transcriptional regulator, Crp/Fnr family
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_1361: transcriptional regulator, Crp/Fnr family
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
transcriptional regulator, Crp/Fnr family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD