Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog CitT - Bacillales

Properties
Regulator type: Transcription factor
Regulator family: CitB
Regulation mode: activator
Biological process: Citrate utilization
Effector: Citrate
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 1 1
Bacillus amyloliquefaciens FZB42 1 1
Bacillus pumilus SAFR-032 1 1
Bacillus licheniformis DSM 13 1 1
Anoxybacillus flavithermus WK1
Geobacillus kaustophilus HTA426
Bacillus cereus ATCC 14579 1 1
Bacillus halodurans C-125 1 1
Bacillus clausii KSM-K16 1 1
Oceanobacillus iheyensis HTE831 3 1
Paenibacillus sp. JDR-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
tctC
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13

Gene: BLi01241: Predicted citrate transport protein TctC
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16

Gene: ABC1013: Predicted citrate transport protein TctC
*
Oceanobacillus iheyensis HTE831

Site:
position = -118
score = 4.7201
sequence = TGAACAAAAAGAACAAAA

Gene: OB3249: Predicted citrate transport protein TctC
 
Paenibacillus sp. JDR-2
Predicted citrate transport protein TctC
tctA
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13

Gene: BLi01242: Predicted citrate transport protein TctB
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16

Gene: ABC1014: Predicted citrate transport protein TctB
 
Oceanobacillus iheyensis HTE831

Gene: OB3248: Predicted citrate transport protein TctB
 
Paenibacillus sp. JDR-2
Predicted citrate transport protein TctB
tctA
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13

Gene: BLi01243: Predicted citrate transport membrane protein TctA
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16

Gene: ABC1015: Predicted citrate transport membrane protein TctA
 
Oceanobacillus iheyensis HTE831

Gene: OB3247: Predicted citrate transport membrane protein TctA
 
Paenibacillus sp. JDR-2
Predicted citrate transport membrane protein TctA
 
CRON 2.
citH
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -156
score = 4.7201
sequence = TGAACAAAATGAACAAAA

Gene: BC0562: Ca2+/citrate complex secondary transporter
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Ca2+/citrate complex secondary transporter
 
CRON 3.
citM
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -158
score = 4.46318
sequence = TGATCAAAAAGAACAAAA

Gene: BSU07610: Mg(2+) Citrate transporter (TC 2.A.11.1.1)
*
Bacillus amyloliquefaciens FZB42

Site:
position = -154
score = 4.7201
sequence = TGAACAAAATGAACGAAA

Gene: RBAM_007810: Mg(2+) Citrate transporter (TC 2.A.11.1.1)
*
Bacillus pumilus SAFR-032

Site:
position = -153
score = 4.7201
sequence = TGAACAAAATGAACAAAA

Gene: BPUM_0710: Mg(2+) Citrate transporter (TC 2.A.11.1.1)
*
Bacillus licheniformis DSM 13

Site:
position = -158
score = 3.96821
sequence = TGGTCAAAAAGAACAAAA

Gene: BLi00221: Mg(2+) Citrate transporter (TC 2.A.11.1.1)
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
*
Bacillus halodurans C-125

Site:
position = -163
score = 4.7201
sequence = TGAACAAAATAAACAAAA

Gene: BH0745: Mg(2+) Citrate transporter (TC 2.A.11.1.1)
*
Bacillus clausii KSM-K16

Site:
position = -114
score = 4.22513
sequence = TGGACAAAATAAAAAAAA

Gene: ABC0100: Mg(2+) Citrate transporter (TC 2.A.11.1.1)
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Mg(2+) Citrate transporter (TC 2.A.11.1.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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